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* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
<strong>Functional residue analysis with Sequence Harmony and
Multi-Relief</strong>
<p>
- The Sequence Harmony and Multi-Relief (SHMR) service (<a
+ The Multi-Harmony (a.k.a. Sequence Harmony and Multi-Relief, or SHMR) service (<a
href="#shmrref">Brandt, Feenstra and Heringa, 2010</a>) available
from the <em>Analysis</em> sub-menu of the alignment window's web
services menu provides a method for the identification of significant
of the alignment. Once submitted, a job progress window will display
status information about your job, including a URL which allows you to
visit the status page on the
- <a href="http://www.ibi.vu.nl/programs/shmrwww/">IBIVU SHMR server</a>.
+ <a href="http://zeus.few.vu.nl/programs/shmrwww/">IBIVU SHMR server</a>.
</p>
<p>When the job is complete, Jalview will automatically open a new
window containing the alignment and groups that were submitted for
href="http://nar.oxfordjournals.org/cgi/content/abstract/gkq415">Nucleic
Acids Res. 38: W35-W40.</a> (<em>* joint first authors</em>)
<p>
- <strong><em>Note:</em></strong> The SHMR service is implemented with Jalview's RESTful
- web service client, first introduced in Jalview 2.7.
+ <strong><em>Note:</em></strong> The Multi-Harmony service is implemented with a prototype of Jalview's RESTful
+ web service client introduced in Jalview 2.7. A few bugs remain in this prototype, which we intend to fixed in version 2.7.1.
</ul>
</p>
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git://source.jalview.org / jalview.git / blobdiff