Merge branch 'develop' into features/JAL-2316

[jalview.git] / help / html / webServices / urllinks.html

diff --git a/help/html/webServices/urllinks.html b/help/html/webServices/urllinks.html
index 7ac76c1..d99633a 100644 (file)
--- a/help/html/webServices/urllinks.html
+++ b/help/html/webServices/urllinks.html
@@ -93,6 +93,21 @@
     the sequence ID for the sequence (<em>since Jalview 2.10.1</em>).
   </p>
   <p>
+    <strong><a name="warning">Warning dialog about updating
+        your configured URL links</a></strong><br /> In the desktop
+    prior to Jalview 2.10.1, the only way to configure custom links for
+    a particular database cross-reference for a sequence was to give it
+    a name that
+    <em>exactly</em> matched the database source, and a regular
+    expression for filtering out any spurious matches generated when the
+    custom linked was tested against the Sequence's ID string. Since the
+    introduction of the $DB_ACCESSION$ token, however, $SEQUENCE_ID$
+    will not be used for database cross-reference accession strings, and
+    if you have custom links configured, Jalview will raise a warning
+    message so let you know that you may need to update your links to
+    use $DB_ACCESSION$.
+  </p>
+  <p>
     <strong>Regular Expression Substitution</strong><br> A url may
     contain a string of the form $SEQUENCE_ID=/<em>regular
     expression</em>/=$ or $DB_ACCESSION=/<em>regular expression</em>/=$.