<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
<title>The Web Services Preferences Dialog Box</title>
</head>
<body>
-<p><strong>The Web Services Preferences Dialog Box</strong></p>
+ <p>
+ <strong>The Web Services Preferences Dialog Box</strong>
+ </p>
-<p>Jalview includes a range of web services clients for data
-retrieval and analysis. The <em>Web Services</em> menu found in each
-alignment window provides access to some of these services, and is
-configured <em>via</em> the web services preference dialog box,
-available from the <em>Preferences</em> panel from the <strong>Tools→Preferences...</strong>
-menu from the Jalview Desktop window's menu bar.</p>
-<p>
-<center><img src="wsprefs.gif" align="center"
- alt="Web Services Preferences Panel" width="571" height="461"><br>
-Web Services Preference Panel</center>
-</p>
- <p>
- <strong>Configuring the list of JABAWS servers</strong><br> The
- main area of the panel shows the list of <a href="JABAWS.html">JABAWS</a>
- servers that Jalview is currently aware of. The list includes a colour coded status:
- green indicates that all services are available for a given server,
- amber signifies that one or more services on the server are not fully
- functional, and red highlights servers that could not be contacted or
- are not functional for some other reason.
- </p>
- <p>A server's URL may be added,
-edited by double clicking on it, or deleted by selecting it and using
-the buttons below. After adding or editing a server's URL, you will be
-asked if you wish to test the server. If you wish to do so, then first
-ensure you can view the new server's test report, which will be output
-on Jalview's standard console output (you can open Jalview's built in
-console viewer via the <strong>Tools→Java Console</strong> menu
-option).</p>
-<p><strong>Controlling the layout of the Web Services Menu</strong><br>
-The range of services that Jalview is able to access depends upon your
-requirements, and local computational resources. However, when a large
-number of resources are available, then the entries and sub menus in the
-<strong>web services</strong> menu can quickly become unwieldly. The
-options in the lower part of the dialog box enable you to control the
-display of each type of analysis service client in the web services
-menu. In addition, indexing options are provided that enable you to
-define the layout of the menus provided for JABAWS services by sorting
-them into submenus according to analysis type and/or host server.</p>
-<p><em>The web services preferences panel was added in Jalview
-2.6, and server status indications added in Jalview 2.8.</em></p>
-<p><strong><a name="wswarnings">Web Services Invalid
-URL warnings</a></strong><br>
-Jalview may inform you of any problems contacting the web services by
-showing a dialog box like the one below:<br>
-<center><img src="invalidurldialog.gif" align="center"
- alt="Web Services Invalid URL Warning dialog box" width="389"
- height="258"><br>
-Web Services Invalid URL Warning dialog box</center>
-<br>
-<strong><em>Note:</em></strong> this warning will be shown if you are running the Jalview desktop
-without any network connection, or if you have configured
-<a href="JABAWS.html">JABA services</a>
-which cannot be accessed from your location. Should you wish to disable
-these warnings, then uncheck the
-<em>Display warnings</em>
-check box in the web services preferences.
-</p>
-<p><em>The web services warnings dialog box was added in
-Jalview 2.6.1</em></p>
+ <p>
+ Jalview includes a range of web services clients for data retrieval
+ and analysis. The <em>Web Services</em> menu found in each alignment
+ window provides access to some of these services, and is configured
+ <em>via</em> the web services preference dialog box, available from
+ the <em>Preferences</em> panel from the <strong>Tools→Preferences...</strong>
+ menu from the Jalview Desktop window's menu bar.
+ </p>
+ <p>
+ <center>
+ <img src="wsprefs.gif" align="center"
+ alt="Web Services Preferences Panel" width="571" height="461"
+ ><br> Web Services Preference Panel
+ </center>
+ </p>
+ <p>
+ <strong>Configuring the list of JABAWS servers</strong><br> The
+ main area of the panel shows the list of <a href="JABAWS.html">JABAWS</a>
+ servers that Jalview is currently aware of. The list includes a
+ colour coded status: green indicates that all services are available
+ for a given server, amber signifies that one or more services on the
+ server are not fully functional, and red highlights servers that
+ could not be contacted or are not functional for some other reason.
+ </p>
+ <p>
+ A server's URL may be added, edited by double clicking on it, or
+ deleted by selecting it and using the buttons below. After adding or
+ editing a server's URL, you will be asked if you wish to test the
+ server. If you wish to do so, then first ensure you can view the new
+ server's test report, which will be output on Jalview's standard
+ console output (you can open Jalview's built in console viewer via
+ the <strong>Tools→Java Console</strong> menu option).
+ </p>
+ <p>
+ <strong>Controlling the layout of the Web Services Menu</strong><br>
+ The range of services that Jalview is able to access depends upon
+ your requirements, and local computational resources. However, when
+ a large number of resources are available, then the entries and sub
+ menus in the <strong>web services</strong> menu can quickly become
+ unwieldly. The options in the lower part of the dialog box enable
+ you to control the display of each type of analysis service client
+ in the web services menu. In addition, indexing options are provided
+ that enable you to define the layout of the menus provided for
+ JABAWS services by sorting them into submenus according to analysis
+ type and/or host server.
+ </p>
+ <p>
+ <em>The web services preferences panel was added in Jalview
+ 2.6, and server status indications added in Jalview 2.8.</em>
+ </p>
+ <p>
+ <strong><a name="wswarnings">Web Services Invalid URL
+ warnings</a></strong><br> Jalview may inform you of any problems
+ contacting the web services by showing a dialog box like the one
+ below:<br>
+ <center>
+ <img src="invalidurldialog.gif" align="center"
+ alt="Web Services Invalid URL Warning dialog box" width="389"
+ height="258"
+ ><br> Web Services Invalid URL Warning dialog box
+ </center>
+ <br>
+ <strong><em>Note:</em></strong> this warning will be shown if you are
+ running the Jalview desktop without any network connection, or if you
+ have configured
+ <a href="JABAWS.html">JABA services</a> which cannot be accessed from
+ your location. Should you wish to disable these warnings, then uncheck
+ the
+ <em>Display warnings</em> check box in the web services preferences.
+ </p>
+ <p>
+ <em>The web services warnings dialog box was added in Jalview
+ 2.6.1</em>
+ </p>
</body>
</html>
git://source.jalview.org / jalview.git / blobdiff