-<html>\r
-<head><title>What's new</title></head>\r
-<body>\r
-<p><strong>What's new</strong> </p>\r
-<p>If you can read this then you'll already have seen some of the recent changes\r
- made to Jalview.<br>\r
- Jalview takes advantage of some of the more recent user interface developments\r
- in the Java programming language. For instance Jalview is now a multi windowed\r
- application, this keeps all your Jalview windows neatly together in one main\r
- application window. </p>\r
-<p>If you were familiar with the original Jalview, here is a list of important\r
- features you should know about the current development:</p>\r
-<ul>\r
- <li>Editing sequences is no longer the default when mouse clicking the alignment.\r
- Instead, mouse clicking on the alignment will create a "selection region"\r
- which may be full sequences or groups of residues.</li>\r
- <li>To edit a sequence, the "Shift" key must be held down</li>\r
- <li>To edit groups, either the "Alt" key or the "Control"\r
- key must be held down.</li>\r
- <li>Colours maybe applied to the background, ie the whole alignment, or to selected\r
- regions. If the tickbox "Apply colour to all groups" is ticked (this\r
- is the default), then the colour will be applied to all groups.</li>\r
- <li>Use the right mouse button (apple and click on the mac) to define a selected\r
- region on the alignment as a new group. </li>\r
- <li>Conservation is automatically updated whenever the alignment is edited</li>\r
- <li>There is no "quick draw" option</li>\r
- <li>Edits can be undone! (and redone)</li>\r
-</ul>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
+<head>
+<title>What's new ?</title>
+</head>
+<body>
+<p><strong>What's new ?</strong></p>
+<p>Jalview 2.6 introduces new web services, and includes an updated
+version of the Jmol molecular graphics visualization system. See the <a
+ href="releases.html#Jalview2.6">release history</a> for the full
+details.</p>
+<p><strong>Highlights in Jalview Version 2.6</strong></p>
+<ul>
+ <li><a href="webServices/JABAWS.html">JABA Web Services</a> for
+ multiple alignment using:
+ <ul>
+ <li>ClustalW</li>
+ <li>MAFFT</li>
+ <li>Muscle</li>
+ <li>ProbCons</li>
+ <li>T-COFFEE</li>
+ </ul>
+ </li>
+ <li>User modifiable alignment service parameters</li>
+ <li>Visualization of superposed structures associated with protein
+ or nucleotide sequence alignments.</li>
+ <li>Export coordinates and projection as CSV from PCA viewer</li>
+</ul>
+
+<p><strong>Issues Resolved (a select list - see release history for details)</strong></p>
+<ul>
+ <li>clustalx colourscheme colours Ds preferentially when both D+E
+ are present in over 50% of the column</li>
+ <li>Prevent sequence fetcher from replacing ',' for ';' when querying DAS sequence sources</li>
+ <li>InstallAnywhere builds fail to launch on OS X java 10.5 update
+ 4 (due to apple Java 1.6 update)</li>
+</ul>
+<p>See the <a href="releases.html">Release History</a> page for
+details of all new features and resolved issues.</p>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff