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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
--->
+ -->
<head>
<title>What's new ?</title>
</head>
<body>
- <p>
- <strong>What's new ?</strong><br /> Jalview 2.8.0b1 is a bugfix
- release for Jalview version 2.8. <br /> As usual you can find the
- highlights below, and the comprehensive list is given in the <a
- href="releases.html#Jalview2.8.0b1">Jalview 2.8.0b1 Release Notes</a>.
- </p>
<p>
- This bug fix release includes numerous minor enhancements made over
- the last 12 months. Importantly, it is also the first release that
- provides Jalview as a trusted application, signed with a certificate
- donated to us by <a href="certum.eu">Certum</a>.
+ <strong>What's new in Jalview 2.10.4 ?</strong>
</p>
- <strong>Enhancements and new features</strong>
- <ul>
- <li>Allow disorder predictions to be made on the current
- selection (or visible selection) in the same way that JPred works</li>
- <li>allow import of data from gzipped files</li>
- <li>Improved per-sequence 'colour-by-annotation' performance</li>
- <li>Support '' style escaping of quotes in Newick files</li>
- <li>group options for JABAWS service by command line name</li>
- <li>Select primary source when selecting authority in database
- fetcher GUI</li>
- <li>COMBINE statement uses current SEQUENCE_REF and GROUP_REF
- scope to group annotation rows</li>
- <li>add .mfa to FASTA file extensions recognised by Jalview</li>
- <li>groovy scripting for headless jalview operation</li>
- <li>Output in Stockholm format</li>
- </ul>
- <strong>Bug fixes</strong>
- <ul>
- <li>Uniprot and PDB database cross-reference fetching works
- properly</li>
- <li>'View all structures' in the desktop is more reliable</li>
- <li>Web services parameter dialog box shows the options enabled
- for different presets</li>
- <li>Interactive creation of RNA secondary structure works more
- smoothly</li>
- <li>Keyboard mode 'P' command jumps to the right place</li>
- <li>Improved support for parsing database cross-references via
- Stockholm and Rfam database</li>
- <li>Improved semantics in annotation files for grouping
- annotation rows associated with particular sequences and groups</li>
- <li>More robust DNA->Amino acid translation</li>
- <li>Improved Headless-mode operation for DAS annotation
- retrieval, groovy script execution and alignment figure generation</li>
- <li>annotation label tooltip text needs to be wrapped</li>
- </ul>
+ <p>
+ This is the February 2018 release of Jalview, with several minor bug fixes and enhanvements.
+ The full list bugs fixed in this release can be found in the <a href="releases.html#Jalview.2.10.4">2.10.4
+ Release Notes</a>. In addition, Jalview 2.10.4 provides:
+ </p>
+ <ul>
+ <li></li>
+ </ul>
+ <p>
+ <strong><a name="experimental">Experimental Features</a></strong>
+ </p>
+ <p>
+ Remember, please enable the <em>Experimental Features</em> option in
+ the Jalview Desktop's <em>Tools</em> menu, and then restart Jalview
+ if you want to try out features below:
+ </p>
+ <ul>
+ <li><em>Annotation transfer between Chimera and Jalview</em><br />Two
+ <a href="features/chimera.html#experimental">new entries in
+ the Chimera viewer's Chimera menu</a> allow positional annotation to
+ be exchanged between Chimera and Jalview.</li>
+ </ul>
+
</body>
</html>
git://source.jalview.org / jalview.git / blobdiff