JAL-1953 fix test and expected for canonical name for PFAM!

[jalview.git] / nbproject / project.properties

diff --git a/nbproject/project.properties b/nbproject/project.properties
index 87df84d..b569f55 100644 (file)
--- a/nbproject/project.properties
+++ b/nbproject/project.properties
@@ -1,3 +1,20 @@
+###############################################################################
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+# Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+# 
+# This file is part of Jalview.
+# 
+# Jalview is free software: you can redistribute it and/or
+# modify it under the terms of the GNU General Public License 
+# as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+#  
+# Jalview is distributed in the hope that it will be useful, but 
+# WITHOUT ANY WARRANTY; without even the implied warranty 
+# of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+# PURPOSE.  See the GNU General Public License for more details.
+# 
+# You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+###############################################################################
 annotation.processing.enabled=true
 annotation.processing.enabled.in.editor=false
 annotation.processing.run.all.processors=true
@@ -42,11 +59,11 @@ file.reference.jalview-src=src
 file.reference.jaxrpc.jar=lib/jaxrpc.jar
 file.reference.JGoogleAnalytics_0.3.jar=lib/JGoogleAnalytics_0.3.jar
 file.reference.jhall.jar=lib/jhall.jar
-file.reference.Jmol-12.1.13.jar=lib/Jmol-12.1.13.jar
-file.reference.JmolApplet-12.1.13.jar=appletlib/JmolApplet-12.1.13.jar
+file.reference.Jmol-14.6.4_2016.10.26.jar=lib/Jmol-14.6.4_2016.10.26.jar
+file.reference.JmolApplet-14.6.4_2016.10.26.jar=appletlib/JmolApplet-14.6.4_2016.10.26.jar
 file.reference.log4j-1.2.8.jar=lib/log4j-1.2.8.jar
 file.reference.mail.jar=lib/mail.jar
-file.reference.min-jaba-client.jar=lib/min-jaba-client.jar
+file.reference.min-jaba-client.jar=lib/min-jaba-client-2.0.jar
 file.reference.regex.jar=lib/regex.jar
 file.reference.saaj.jar=lib/saaj.jar
 file.reference.vamsas-client.jar=lib/vamsas-client.jar
@@ -54,6 +71,7 @@ file.reference.wsdl4j.jar=lib/wsdl4j.jar
 file.reference.xercesImpl.jar=lib/xercesImpl.jar
 file.reference.xml-apis.jar=lib/xml-apis.jar
 file.reference.miglayout-4.0-swing.jar=lib/miglayout-4.0-swing.jar
+file.reference.varna-3.9-dev.jar=lib/VARNAv3.9.jar
 includes=**
 jar.compress=false
 javac.classpath=\
@@ -74,7 +92,7 @@ javac.classpath=\
     ${file.reference.jaxrpc.jar}:\
     ${file.reference.JGoogleAnalytics_0.3.jar}:\
     ${file.reference.jhall.jar}:\
-    ${file.reference.Jmol-12.1.13.jar}:\
+    ${file.reference.Jmol-14.6.4_2016.10.26.jar}:\
     ${file.reference.miglayout-4.0-swing.jar}:\
     ${file.reference.log4j-1.2.8.jar}:\
     ${file.reference.mail.jar}:\
@@ -83,7 +101,8 @@ javac.classpath=\
     ${file.reference.xml-apis.jar}:\
     ${file.reference.xercesImpl.jar}:\
     ${file.reference.wsdl4j.jar}:\
-    ${file.reference.JmolApplet-12.1.13.jar}
+    ${file.reference.JmolApplet-14.6.4_2016.10.26.jar} \
+    ${file.reference.varna-3.9-dev.jar}
 # Space-separated list of extra javac options
 javac.compilerargs=
 javac.deprecation=false