JAL-2101 JAL-2071 JAL-1563 Added fix to enable searching for old entry names in Unipr...

[jalview.git] / resources / fts / uniprot_data_columns.txt

diff --git a/resources/fts/uniprot_data_columns.txt b/resources/fts/uniprot_data_columns.txt
index 6c78c16..c6b037c 100644 (file)
--- a/resources/fts/uniprot_data_columns.txt
+++ b/resources/fts/uniprot_data_columns.txt
@@ -1,3 +1,24 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+
 uniprot_data_columns
 #
 _group.id
@@ -35,16 +56,16 @@ _data_column.preferred_col_width
 _data_column.is_shown_by_default
 _data_column.is_searchable
 Uniprot Id;id;String;g3;80;150;85;true;true
-Entry Name;entry name|name;String;g3;100;150;105;true;true
-Protein names;protein names|protein name;String;g3;300;1500;500;true;true
+Entry Name;entry name|mnemonic;String;g3;100;150;105;true;true
+Protein names;protein names|name;String;g3;300;1500;500;true;true
 Gene Names;genes|gene;String;g3;100;1000;145;true;true
 Organism;organism;String;g3;100;1000;200;true;true
-Organism ID;organism-id;int;g3;60;100;80;false;true
-Proteomes;proteome;String;g3;50;1000;95;false;true
-Taxonomic lineage (ALL);lineage(ALL);String;g3;50;400;95;false;false
-Virus hosts;virus hosts;String;g3;50;1000;95;false;true
-Fragment;fragment;String;g7;50;1000;95;false;true
-Gene encoded by;encodedon;String;g7;50;1000;95;false;true
+Organism ID;organism-id;int;g3;60;100;80;false;false
+Proteomes;proteome;String;g3;50;1000;95;false;false
+Taxonomic lineage (ALL);lineage(ALL)|taxonomy;String;g3;50;400;95;false;false
+Virus hosts;virus hosts|host;String;g3;50;1000;95;false;true
+Fragment;fragment;String;g7;50;1000;95;false;false
+Gene encoded by;encodedon;String;g7;50;1000;95;false;false
 Alternative products (isoforms);comment(ALTERNATIVE PRODUCTS);String;g7;50;1000;95;false;false
 Erroneous gene model prediction;comment(ERRONEOUS GENE MODEL PREDICTION);String;g7;50;1000;95;false;false
 Erroneous initiation;comment(ERRONEOUS INITIATION);String;g7;50;1000;95;false;false
@@ -55,9 +76,9 @@ Polymorphism;comment(POLYMORPHISM);String;g7;50;1000;95;false;false
 RNA editing;comment(RNA EDITING);String;g7;50;1000;95;false;false
 Sequence caution;comment(SEQUENCE CAUTION);String;g7;50;1000;95;false;false
 Status;reviewed;String;g6;50;100;95;true;true
-Length;length;int;g7;50;100;65;true;true
+Length;length;int|T|0;g7;50;100;65;true;true
 Mass;mass;String;g7;50;100;80;false;true
-Sequence;sequence;String;g7;50;1000;95;false;true
+Sequence;sequence;String;g7;50;1000;95;false;false
 Alternative sequence;feature(ALTERNATIVE SEQUENCE);String;g7;50;1000;95;false;false
 Natural variant;feature(NATURAL VARIANT);String;g7;50;1000;95;false;false
 Non-adjacent residues;feature(NON ADJACENT RESIDUES);String;g7;50;1000;95;false;false
@@ -83,15 +104,15 @@ DNA binding;feature(DNA BINDING);String;g8;50;1000;95;false;false
 Metal binding;feature(METAL BINDING);String;g8;50;1000;95;false;false
 Nucleotide binding;feature(NP BIND);String;g8;50;1000;95;false;false
 Site;feature(SITE);String;g8;50;1000;95;false;false
-Annotation;annotation score;String;g6;50;1000;95;false;true
-Features;features;String;g6;50;1000;95;false;true
+Annotation;annotation score;String;g6;50;1000;95;false;false
+Features;features;String;g6;50;1000;95;false;false
 Caution;comment(CAUTION);String;g6;50;1000;95;false;false
 Miscellaneous [CC];comment(GENERAL);String;g6;50;1000;95;false;false
-Keywords;keywords;String;g6;50;1000;95;false;true
+Keywords;keywords|keyword;String;g6;50;1000;95;false;true
 Protein existence;existence;String;g6;50;1000;95;false;true
 ALL;Search All;String;g7;50;1000;95;false;true;
 Subunit structure [CC];comment(SUBUNIT);String;g9;50;1000;95;false;false
-Interacts with;interactor;String;g9;50;1000;95;false;true
+Interacts with;interactor;String;g9;50;1000;95;false;false
 Developmental stage;comment(DEVELOPMENTAL STAGE);String;g10;50;1000;95;false;false
 Induction;comment(INDUCTION);String;g10;50;1000;95;false;false
 Tissue specificity;comment(TISSUE SPECIFICITY);String;g10;50;1000;95;false;false