JAL-2964 tree@linkToAllViews attribute added to project schema

[jalview.git] / schemas / jalview.xsd

diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 258ee3b..e5058c6 100755 (executable)
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) 
-       * Copyright (C) 2015 The Jalview Authors * * This file is part of 
+<!-- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) 
+       * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of 
        Jalview. * * Jalview is free software: you can redistribute it and/or * modify 
        it under the terms of the GNU General Public License * as published by the 
        Free Software Foundation, either version 3 of the License, or (at your option) 
@@ -493,6 +493,7 @@
                                                        </xs:annotation>
                                                </xs:attribute>
                                                <xs:attributeGroup ref="jv:swingwindow" />
+                                               <xs:attribute name="linkToAllViews" use="optional" default="false" type="xs:boolean" />
                                        </xs:complexType>
                                </xs:element>
                                <xs:element name="FeatureSettings" minOccurs="0">
@@ -500,6 +501,18 @@
                                                <xs:sequence>
                                                        <xs:element name="setting" minOccurs="0" maxOccurs="unbounded">
                                                                <xs:complexType>
+                                                                       <xs:sequence>
+                                                                           <xs:element name="attributeName" type="xs:string" minOccurs="0" maxOccurs="2">
+                                                                                       <xs:annotation>
+                                                                                               <xs:documentation>name of feature attribute to colour by, or attribute and sub-attribute</xs:documentation>
+                                                                                       </xs:annotation>
+                                                                           </xs:element> 
+                                                                               <xs:element name="matcherSet" minOccurs="0" type="jalview:FeatureMatcherSet">
+                                                                                       <xs:annotation>
+                                                                                               <xs:documentation>optional filter(s) applied to the feature type</xs:documentation>
+                                                                                       </xs:annotation>
+                                                                               </xs:element>
+                                                                       </xs:sequence>
                                                                        <xs:attribute name="type" type="xs:string" use="required" />
                                                                        <xs:attribute name="colour" type="xs:int" use="required" />
                                                                        <xs:attribute name="display" type="xs:boolean"
@@ -515,6 +528,7 @@
                                                                                        </xs:documentation>
                                                                                </xs:annotation>
                                                                        </xs:attribute>
+                                                                       <xs:attribute name="noValueColour" use="optional" type="jalview:NoValueColour" default="Min" />
                                                                        <xs:attribute name="threshold" type="xs:float"
                                                                                use="optional">
                                                                                <xs:annotation>
@@ -559,6 +573,11 @@
                        <xs:element name="otherData" minOccurs="0" maxOccurs="unbounded">
                                <xs:complexType>
                                        <xs:attribute name="key" type="xs:string" use="required" />
+                                       <xs:attribute name="key2" type="xs:string" use="optional">
+                                               <xs:annotation>
+                                                       <xs:documentation>key2 may be used for a sub-attribute of key</xs:documentation>
+                                               </xs:annotation>
+                                       </xs:attribute>
                                        <xs:attribute name="value" type="xs:string" use="required" />
                                </xs:complexType>
                        </xs:element>