-<?xml version="1.0" encoding="UTF-8"?>\r
-<!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->\r
-<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
- <xs:complexType name="VAMSAS">\r
- <xs:sequence>\r
- <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">\r
- <xs:complexType>\r
- <xs:sequence>\r
- <xs:element name="Annotation" minOccurs="0">\r
- <xs:complexType>\r
- <xs:sequence>\r
- <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>\r
- <xs:element name="label" type="xs:string"/>\r
- <xs:element name="description" type="xs:string"/>\r
- </xs:sequence>\r
- <xs:attribute name="graph" type="xs:boolean" use="required"/>\r
- <xs:attribute name="graphType" type="xs:int" use="optional"/>\r
- </xs:complexType>\r
- </xs:element>\r
- <xs:element ref="vamsas:SequenceSet"/>\r
- </xs:sequence>\r
- </xs:complexType>\r
- </xs:element>\r
- <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>\r
- <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>\r
- </xs:sequence>\r
- </xs:complexType>\r
- <xs:element name="SequenceSet">\r
- <xs:complexType>\r
- <xs:sequence>\r
- <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>\r
- <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">\r
- <xs:complexType>\r
- <xs:sequence>\r
- <xs:element name="description" type="xs:string" minOccurs="0"/>\r
- <xs:element name="status" type="xs:string" minOccurs="0"/>\r
- <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
- </xs:sequence>\r
- <xs:attribute name="type" type="xs:string" use="required"/>\r
- <xs:attribute name="end" type="xs:string" use="required"/>\r
- <xs:attribute name="begin" type="xs:string" use="required"/>\r
- <xs:attribute name="seqRef" type="xs:string" use="required"/>\r
- </xs:complexType>\r
- </xs:element>\r
- </xs:sequence>\r
- <xs:attribute name="gapChar" type="xs:string" use="required"/>\r
- <xs:attribute name="aligned" type="xs:boolean" use="optional"/>\r
- </xs:complexType>\r
- </xs:element>\r
- <xs:element name="annotationElement">\r
- <xs:complexType>\r
- <xs:sequence>\r
- <xs:element name="displayCharacter" type="xs:string"/>\r
- <xs:element name="description" type="xs:string"/>\r
- <xs:element name="secondaryStructure">\r
- <xs:simpleType>\r
- <xs:restriction base="xs:string">\r
- <xs:length value="1"/>\r
- </xs:restriction>\r
- </xs:simpleType>\r
- </xs:element>\r
- <xs:element name="value" type="xs:float"/>\r
- </xs:sequence>\r
- <xs:attribute name="position" type="xs:int" use="required"/>\r
- </xs:complexType>\r
- </xs:element>\r
- <xs:complexType name="SequenceType">\r
- <xs:sequence>\r
- <xs:element name="sequence" type="xs:string"/>\r
- <xs:element name="name" type="xs:string"/>\r
- </xs:sequence>\r
- <xs:attribute name="id" type="xs:string"/>\r
- <xs:attribute name="description" type="xs:string"/>\r
- </xs:complexType>\r
-</xs:schema>\r
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
+ <xs:complexType name="VAMSAS">
+ <xs:sequence>
+ <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
+ </xs:sequence>
+ </xs:complexType>
+ <xs:element name="SequenceSet">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element name="Sequence" minOccurs="0" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:complexContent>
+ <xs:extension base="vamsas:SequenceType">
+ <xs:sequence>
+ <xs:element name="DBRef" minOccurs="0" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:attribute name="source" type="xs:string"/>
+ <xs:attribute name="version" type="xs:string"/>
+ <xs:attribute name="accessionId" type="xs:string"/>
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ </xs:extension>
+ </xs:complexContent>
+ </xs:complexType>
+ </xs:element>
+ <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
+ <xs:element name="label" type="xs:string"/>
+ <xs:element name="description" type="xs:string" minOccurs="0"/>
+ <xs:element name="thresholdLine" minOccurs="0">
+ <xs:complexType>
+ <xs:attribute name="label" type="xs:string"/>
+ <xs:attribute name="value" type="xs:float"/>
+ <xs:attribute name="colour" type="xs:int"/>
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ <xs:attribute name="graph" type="xs:boolean" use="required"/>
+ <xs:attribute name="graphType" type="xs:int" use="optional"/>
+ <xs:attribute name="sequenceRef" type="xs:string" use="optional"/>
+ <xs:attribute name="graphColour" type="xs:int" use="optional"/>
+ <xs:attribute name="graphGroup" type="xs:int" use="optional"/>
+ <xs:attribute name="id" type="xs:string" use="optional"/>
+ <xs:attribute name="scoreOnly" type="xs:boolean" use="optional" default="false"/>
+ <xs:attribute name="score" type="xs:double" use="optional"/>
+ <xs:attribute name="visible" type="xs:boolean" use="optional"/>
+ </xs:complexType>
+ </xs:element>
+ <xs:element name="sequenceSetProperties" minOccurs="0" maxOccurs="unbounded">
+ <xs:complexType>
+ <xs:attribute name="key" type="xs:string"/>
+ <xs:attribute name="value" type="xs:string"/>
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ <xs:attribute name="gapChar" type="xs:string" use="required"/>
+ </xs:complexType>
+ </xs:element>
+ <xs:element name="annotationElement">
+ <xs:complexType>
+ <xs:sequence>
+ <xs:element name="displayCharacter" type="xs:string" minOccurs="0"/>
+ <xs:element name="description" type="xs:string" minOccurs="0"/>
+ <xs:element name="secondaryStructure" minOccurs="0">
+ <xs:simpleType>
+ <xs:restriction base="xs:string">
+ <xs:length value="1"/>
+ </xs:restriction>
+ </xs:simpleType>
+ </xs:element>
+ <xs:element name="value" type="xs:float" minOccurs="0"/>
+ </xs:sequence>
+ <xs:attribute name="position" type="xs:int" use="required"/>
+ <xs:attribute name="colour" type="xs:int" use="optional"/>
+ </xs:complexType>
+ </xs:element>
+ <xs:complexType name="SequenceType">
+ <xs:sequence>
+ <xs:element name="sequence" type="xs:string" minOccurs="0"/>
+ <xs:element name="name" type="xs:string" minOccurs="0"/>
+ </xs:sequence>
+ <xs:attribute name="id" type="xs:string"/>
+ <xs:attribute name="description" type="xs:string"/>
+ </xs:complexType>
+</xs:schema>
git://source.jalview.org / jalview.git / blobdiff