/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package MCview;
-import java.awt.*;
-import java.awt.event.*;
+import jalview.appletgui.AlignmentPanel;
+import jalview.appletgui.EmbmenuFrame;
+import jalview.datamodel.PDBEntry;
+import jalview.datamodel.SequenceI;
+import jalview.schemes.BuriedColourScheme;
+import jalview.schemes.HelixColourScheme;
+import jalview.schemes.HydrophobicColourScheme;
+import jalview.schemes.StrandColourScheme;
+import jalview.schemes.TaylorColourScheme;
+import jalview.schemes.TurnColourScheme;
+import jalview.schemes.ZappoColourScheme;
+import jalview.util.MessageManager;
-import jalview.appletgui.*;
-import jalview.datamodel.*;
-import jalview.schemes.*;
+import java.awt.BorderLayout;
+import java.awt.CheckboxGroup;
+import java.awt.CheckboxMenuItem;
+import java.awt.Frame;
+import java.awt.Menu;
+import java.awt.MenuBar;
+import java.awt.MenuItem;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
-
-public class AppletPDBViewer
- extends EmbmenuFrame implements ActionListener, ItemListener
+public class AppletPDBViewer extends EmbmenuFrame implements
+ ActionListener, ItemListener
{
AppletPDBCanvas pdbcanvas;
- public AppletPDBViewer(PDBEntry pdbentry,
- SequenceI[] seq,
- String [] chains,
- AlignmentPanel ap,
- String protocol)
+ public AppletPDBViewer(PDBEntry pdbentry, SequenceI[] seq,
+ String[] chains, AlignmentPanel ap, String protocol)
{
try
{
jbInit();
- }
- catch (Exception ex)
+ } catch (Exception ex)
{
ex.printStackTrace();
}
embedMenuIfNeeded(pdbcanvas);
add(pdbcanvas, BorderLayout.CENTER);
- StringBuffer title = new StringBuffer(seq[0].getName()
- + ":"
- + pdbcanvas.pdbentry.getFile());
+ StringBuffer title = new StringBuffer(seq[0].getName() + ":"
+ + pdbcanvas.pdbentry.getFile());
jalview.bin.JalviewLite.addFrame(this, title.toString(), 400, 400);
}
-
-
public void actionPerformed(ActionEvent evt)
{
if (evt.getSource() == mapping)
{
- jalview.appletgui.CutAndPasteTransfer cap
- = new jalview.appletgui.CutAndPasteTransfer(false, null);
+ jalview.appletgui.CutAndPasteTransfer cap = new jalview.appletgui.CutAndPasteTransfer(
+ false, null);
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "PDB - Sequence Mapping", 500,
- 600);
+ jalview.bin.JalviewLite.addFrame(frame,
+ MessageManager.getString("label.pdb_sequence_mapping"), 500,
+ 600);
cap.setText(pdbcanvas.mappingDetails.toString());
}
}
else if (evt.getSource() == wire)
{
- pdbcanvas.wire = !pdbcanvas.wire;
+ pdbcanvas.wire = !pdbcanvas.wire;
}
else if (evt.getSource() == depth)
{
pdbcanvas.repaint();
}
- private void jbInit()
- throws Exception
+ private void jbInit() throws Exception
{
setMenuBar(jMenuBar1);
- fileMenu.setLabel("File");
- coloursMenu.setLabel("Colours");
- mapping.setLabel("View Mapping");
+ fileMenu.setLabel(MessageManager.getString("action.file"));
+ coloursMenu.setLabel(MessageManager.getString("label.colours"));
+ mapping.setLabel(MessageManager.getString("label.view_mapping"));
mapping.addActionListener(this);
- wire.setLabel("Wireframe");
+ wire.setLabel(MessageManager.getString("label.wireframe"));
wire.addItemListener(this);
depth.setState(true);
- depth.setLabel("Depthcue");
+ depth.setLabel(MessageManager.getString("label.depthcue"));
depth.addItemListener(this);
zbuffer.setState(true);
- zbuffer.setLabel("Z Buffering");
+ zbuffer.setLabel(MessageManager.getString("label.z_buffering"));
zbuffer.addItemListener(this);
- charge.setLabel("Charge & Cysteine");
+ charge.setLabel(MessageManager.getString("label.charge_cysteine"));
charge.addActionListener(this);
- hydro.setLabel("Hydrophobicity");
+ hydro.setLabel(MessageManager.getString("label.hydrophobicity"));
hydro.addActionListener(this);
- chain.setLabel("By Chain");
+ chain.setLabel(MessageManager.getString("action.by_chain"));
chain.addActionListener(this);
- seqButton.setLabel("By Sequence");
+ seqButton.setLabel(MessageManager.getString("action.by_sequence"));
seqButton.addActionListener(this);
- allchains.setLabel("All Chains Visible");
+ allchains
+ .setLabel(MessageManager.getString("label.all_chains_visible"));
allchains.addItemListener(this);
- viewMenu.setLabel("View");
- zappo.setLabel("Zappo");
+ viewMenu.setLabel(MessageManager.getString("action.view"));
+ zappo.setLabel(MessageManager.getString("label.zappo"));
zappo.addActionListener(this);
- taylor.setLabel("Taylor");
+ taylor.setLabel(MessageManager.getString("label.taylor"));
taylor.addActionListener(this);
- helix.setLabel("Helix Propensity");
+ helix.setLabel(MessageManager.getString("label.helix_propensity"));
helix.addActionListener(this);
- strand.setLabel("Strand Propensity");
+ strand.setLabel(MessageManager.getString("label.strand_propensity"));
strand.addActionListener(this);
- turn.setLabel("Turn Propensity");
+ turn.setLabel(MessageManager.getString("label.turn_propensity"));
turn.addActionListener(this);
- buried.setLabel("Buried Index");
+ buried.setLabel(MessageManager.getString("label.buried_index"));
buried.addActionListener(this);
- user.setLabel("User Defined...");
+ user.setLabel(MessageManager.getString("action.user_defined"));
user.addActionListener(this);
jMenuBar1.add(fileMenu);
jMenuBar1.add(coloursMenu);
jMenuBar1.add(viewMenu);
- fileMenu.add(mapping); ;
+ fileMenu.add(mapping);
+ ;
coloursMenu.add(seqButton);
coloursMenu.add(chain);
}
MenuBar jMenuBar1 = new MenuBar();
+
Menu fileMenu = new Menu();
+
Menu coloursMenu = new Menu();
+
MenuItem mapping = new MenuItem();
+
CheckboxGroup bg = new CheckboxGroup();
+
CheckboxMenuItem wire = new CheckboxMenuItem();
+
CheckboxMenuItem depth = new CheckboxMenuItem();
+
CheckboxMenuItem zbuffer = new CheckboxMenuItem();
MenuItem charge = new MenuItem();
+
MenuItem hydro = new MenuItem();
+
MenuItem chain = new MenuItem();
+
MenuItem seqButton = new MenuItem();
CheckboxMenuItem allchains = new CheckboxMenuItem();
+
Menu viewMenu = new Menu();
+
MenuItem turn = new MenuItem();
+
MenuItem strand = new MenuItem();
+
MenuItem helix = new MenuItem();
+
MenuItem taylor = new MenuItem();
+
MenuItem zappo = new MenuItem();
- MenuItem buried = new MenuItem();
- MenuItem user = new MenuItem();
+ MenuItem buried = new MenuItem();
-//End StructureListener
-////////////////////////////
+ MenuItem user = new MenuItem();
+ // End StructureListener
+ // //////////////////////////
}
git://source.jalview.org / jalview.git / blobdiff