REpaint after sequence col selected

[jalview.git] / src / MCview / PDBCanvas.java

diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java
index f853106..70f959f 100755 (executable)
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -189,8 +189,6 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
 \r
         scale = findScale();\r
 \r
-\r
-        updateSeqColours();\r
         ToolTipManager.sharedInstance().registerComponent(this);\r
         ToolTipManager.sharedInstance().setInitialDelay(0);\r
         ToolTipManager.sharedInstance().setDismissDelay(10000);\r
@@ -215,6 +213,10 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
           }\r
         }\r
       }\r
+\r
+      updateSeqColours();\r
+      redrawneeded = true;\r
+      repaint();\r
     }\r
 \r
 \r
@@ -430,7 +432,7 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
       {\r
         for (int ii = 0; ii < pdb.chains.size(); ii++)\r
         {\r
-          colourBySequence( mainchain );\r
+          colourBySequence( (PDBChain) pdb.chains.elementAt(ii));\r
         }\r
       }\r
 \r
@@ -478,6 +480,9 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
         tmp.startCol = Color.lightGray;\r
         tmp.endCol = Color.lightGray;\r
 \r
+        if(chain!=mainchain)\r
+          continue;\r
+\r
         if ( (tmp.at1.resNumber >= ( (chain.offset + chain.pdbstart) - 1)) &&\r
             (tmp.at1.resNumber <= ( (chain.offset + chain.pdbend) - 1)))\r
         {\r
@@ -513,8 +518,6 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
 \r
     public void drawScene(Graphics g)\r
     {\r
-\r
-\r
         if (zbuffer)\r
         {\r
             Zsort.Zsort(visiblebonds);\r
@@ -543,7 +546,6 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
                 if (tmpBond.start[2] < (centre[2] - (maxwidth / 6))) {\r
                     g.setColor(tmpBond.startCol.darker().darker());\r
                     drawLine(g, xstart, ystart, xmid, ymid);\r
-\r
                     g.setColor(tmpBond.endCol.darker().darker());\r
                     drawLine(g, xmid, ymid, xend, yend);\r
                 } else if (tmpBond.start[2] < (centre[2] + (maxwidth / 6))) {\r
@@ -976,7 +978,5 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe
       mainchain.isVisible = true;\r
       findCentre();\r
       setupBonds();\r
-      redrawneeded = true;\r
-      repaint();\r
     }\r
 }\r