ana.getCalcId(), ana.label);
if (transfer == null || transfer.size() == 0)
{
+ ana = new AlignmentAnnotation(ana);
ana.liftOver(sequence, shadowMap);
ana.liftOver(dsq, sqmpping);
dsq.addAlignmentAnnotation(ana);
.getAlignmentAnnotations(ana.getCalcId(), ana.label);
if (transfer == null || transfer.size() == 0)
{
+ ana = new AlignmentAnnotation(ana);
ana.liftOver(dsq, sqmpping);
// mapping.transfer(ana);
}