JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob
[jalview.git] / src / ext / vamsas / JpredSoapBindingStub.java
index 4c8fc7f..079ce85 100755 (executable)
@@ -1,18 +1,34 @@
-/**
- * JpredSoapBindingStub.java
- *
- * This file was auto-generated from WSDL
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-
 package ext.vamsas;
 
-public class JpredSoapBindingStub
-    extends org.apache.axis.client.Stub implements ext.vamsas.Jpred
+public class JpredSoapBindingStub extends org.apache.axis.client.Stub
+        implements ext.vamsas.Jpred
 {
   private java.util.Vector cachedSerClasses = new java.util.Vector();
+
   private java.util.Vector cachedSerQNames = new java.util.Vector();
+
   private java.util.Vector cachedSerFactories = new java.util.Vector();
+
   private java.util.Vector cachedDeserFactories = new java.util.Vector();
 
   static org.apache.axis.description.OperationDesc[] _operations;
@@ -29,12 +45,11 @@ public class JpredSoapBindingStub
     oper = new org.apache.axis.description.OperationDesc();
     oper.setName("predict");
     oper.addParameter(new javax.xml.namespace.QName("", "seq"),
-                      new javax.xml.
-                      namespace.QName("simple.objects.vamsas", "Sequence"),
-                      vamsas.objects.simple.Sequence.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
+            new javax.xml.namespace.QName("simple.objects.vamsas",
+                    "Sequence"), vamsas.objects.simple.Sequence.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.setReturnType(new javax.xml.namespace.QName(
-        "http://www.w3.org/2001/XMLSchema", "string"));
+            "http://www.w3.org/2001/XMLSchema", "string"));
     oper.setReturnClass(java.lang.String.class);
     oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
@@ -44,15 +59,15 @@ public class JpredSoapBindingStub
     oper = new org.apache.axis.description.OperationDesc();
     oper.setName("predictOnMsa");
     oper.addParameter(new javax.xml.namespace.QName("", "msf"),
-                      new javax.xml.
-                      namespace.QName("http://simple.objects.vamsas",
-                                      "Msfalignment"),
-                      vamsas.objects.simple.Msfalignment.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
+            new javax.xml.namespace.QName("http://simple.objects.vamsas",
+                    "Msfalignment"),
+            vamsas.objects.simple.Msfalignment.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.setReturnType(new javax.xml.namespace.QName(
-        "http://www.w3.org/2001/XMLSchema", "string"));
+            "http://www.w3.org/2001/XMLSchema", "string"));
     oper.setReturnClass(java.lang.String.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "predictOnMsaReturn"));
+    oper.setReturnQName(new javax.xml.namespace.QName("",
+            "predictOnMsaReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
     oper.setUse(org.apache.axis.constants.Use.ENCODED);
     _operations[1] = oper;
@@ -60,14 +75,15 @@ public class JpredSoapBindingStub
     oper = new org.apache.axis.description.OperationDesc();
     oper.setName("getpredict");
     oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
-                      new javax.
-                      xml.namespace.QName("http://www.w3.org/2001/XMLSchema",
-                                          "string"), java.lang.String.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.setReturnType(new javax.xml.namespace.QName(
-        "http://simple.objects.vamsas", "Secstructpred"));
+            "http://simple.objects.vamsas", "Secstructpred"));
     oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
-    oper.setReturnQName(new javax.xml.namespace.QName("", "getpredictReturn"));
+    oper.setReturnQName(new javax.xml.namespace.QName("",
+            "getpredictReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
     oper.setUse(org.apache.axis.constants.Use.ENCODED);
     _operations[2] = oper;
@@ -75,12 +91,12 @@ public class JpredSoapBindingStub
     oper = new org.apache.axis.description.OperationDesc();
     oper.setName("getresult");
     oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
-                      new javax.
-                      xml.namespace.QName("http://www.w3.org/2001/XMLSchema",
-                                          "string"), java.lang.String.class,
-                      org.apache.axis.description.ParameterDesc.IN, false, false);
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
+            org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.setReturnType(new javax.xml.namespace.QName(
-        "http://simple.objects.vamsas", "JpredResult"));
+            "http://simple.objects.vamsas", "JpredResult"));
     oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
     oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn"));
     oper.setStyle(org.apache.axis.constants.Style.RPC);
@@ -89,22 +105,20 @@ public class JpredSoapBindingStub
 
   }
 
-  public JpredSoapBindingStub()
-      throws org.apache.axis.AxisFault
+  public JpredSoapBindingStub() throws org.apache.axis.AxisFault
   {
     this(null);
   }
 
   public JpredSoapBindingStub(java.net.URL endpointURL,
-                              javax.xml.rpc.Service service)
-      throws org.apache.axis.AxisFault
+          javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
   {
     this(service);
     super.cachedEndpoint = endpointURL;
   }
 
   public JpredSoapBindingStub(javax.xml.rpc.Service service)
-      throws org.apache.axis.AxisFault
+          throws org.apache.axis.AxisFault
   {
     if (service == null)
     {
@@ -117,18 +131,26 @@ public class JpredSoapBindingStub
     java.lang.Class cls;
     javax.xml.namespace.QName qName;
     java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
-    java.lang.Class beandf = org.apache.axis.encoding.ser.
-        BeanDeserializerFactory.class;
-    /*java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
-                 java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
-                 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
-                 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
-                 java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
-                 java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
-                 java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
-                 java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;*/
+    java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+    /*
+     * java.lang.Class enumsf =
+     * org.apache.axis.encoding.ser.EnumSerializerFactory.class; java.lang.Class
+     * enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+     * java.lang.Class arraysf =
+     * org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+     * java.lang.Class arraydf =
+     * org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+     * java.lang.Class simplesf =
+     * org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+     * java.lang.Class simpledf =
+     * org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+     * java.lang.Class simplelistsf =
+     * org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+     * java.lang.Class simplelistdf =
+     * org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+     */
     qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
-                                          "JpredResult");
+            "JpredResult");
     cachedSerQNames.add(qName);
     cls = vamsas.objects.simple.JpredResult.class;
     cachedSerClasses.add(cls);
@@ -143,7 +165,7 @@ public class JpredSoapBindingStub
     cachedDeserFactories.add(beandf);
 
     qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
-                                          "Secstructpred");
+            "Secstructpred");
     cachedSerQNames.add(qName);
     cls = vamsas.objects.simple.Secstructpred.class;
     cachedSerClasses.add(cls);
@@ -151,14 +173,15 @@ public class JpredSoapBindingStub
     cachedDeserFactories.add(beandf);
 
     qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
-                                          "Msfalignment");
+            "Msfalignment");
     cachedSerQNames.add(qName);
     cls = vamsas.objects.simple.Msfalignment.class;
     cachedSerClasses.add(cls);
     cachedSerFactories.add(beansf);
     cachedDeserFactories.add(beandf);
 
-    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence");
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+            "Sequence");
     cachedSerQNames.add(qName);
     cls = vamsas.objects.simple.Sequence.class;
     cachedSerClasses.add(cls);
@@ -168,12 +191,12 @@ public class JpredSoapBindingStub
   }
 
   protected org.apache.axis.client.Call createCall()
-      throws java.rmi.RemoteException
+          throws java.rmi.RemoteException
   {
     try
     {
-      org.apache.axis.client.Call _call =
-          (org.apache.axis.client.Call)super.service.createCall();
+      org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+              .createCall();
       if (super.maintainSessionSet)
       {
         _call.setMaintainSession(super.maintainSession);
@@ -214,33 +237,31 @@ public class JpredSoapBindingStub
         if (firstCall())
         {
           // must set encoding style before registering serializers
-          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.
-                               SOAP11_CONSTANTS);
+          _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
           _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
           for (int i = 0; i < cachedSerFactories.size(); ++i)
           {
             java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
-            javax.xml.namespace.QName qName =
-                (javax.xml.namespace.QName) cachedSerQNames.get(i);
-            java.lang.Class sf = (java.lang.Class)
-                cachedSerFactories.get(i);
-            java.lang.Class df = (java.lang.Class)
-                cachedDeserFactories.get(i);
+            javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+                    .get(i);
+            java.lang.Class sf = (java.lang.Class) cachedSerFactories
+                    .get(i);
+            java.lang.Class df = (java.lang.Class) cachedDeserFactories
+                    .get(i);
             _call.registerTypeMapping(cls, qName, sf, df, false);
           }
         }
       }
       return _call;
-    }
-    catch (java.lang.Throwable _t)
+    } catch (java.lang.Throwable _t)
     {
       throw new org.apache.axis.AxisFault(
-          "Failure trying to get the Call object", _t);
+              "Failure trying to get the Call object", _t);
     }
   }
 
   public java.lang.String predict(vamsas.objects.simple.Sequence seq)
-      throws java.rmi.RemoteException
+          throws java.rmi.RemoteException
   {
     if (super.cachedEndpoint == null)
     {
@@ -251,12 +272,12 @@ public class JpredSoapBindingStub
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict"));
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "predict"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {seq});
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -268,17 +289,17 @@ public class JpredSoapBindingStub
       try
       {
         return (java.lang.String) _resp;
-      }
-      catch (java.lang.Exception _exception)
+      } catch (java.lang.Exception _exception)
       {
-        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp,
-            java.lang.String.class);
+        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
+                _resp, java.lang.String.class);
       }
     }
   }
 
-  public java.lang.String predictOnMsa(vamsas.objects.simple.Msfalignment msf)
-      throws java.rmi.RemoteException
+  public java.lang.String predictOnMsa(
+          vamsas.objects.simple.Msfalignment msf)
+          throws java.rmi.RemoteException
   {
     if (super.cachedEndpoint == null)
     {
@@ -290,12 +311,11 @@ public class JpredSoapBindingStub
     _call.setSOAPActionURI("");
     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
     _call.setOperationName(new javax.xml.namespace.QName("vamsas",
-        "predictOnMsa"));
+            "predictOnMsa"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {msf});
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -307,17 +327,16 @@ public class JpredSoapBindingStub
       try
       {
         return (java.lang.String) _resp;
-      }
-      catch (java.lang.Exception _exception)
+      } catch (java.lang.Exception _exception)
       {
-        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp,
-            java.lang.String.class);
+        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
+                _resp, java.lang.String.class);
       }
     }
   }
 
-  public vamsas.objects.simple.Secstructpred getpredict(java.lang.String job_id)
-      throws java.rmi.RemoteException
+  public vamsas.objects.simple.Secstructpred getpredict(
+          java.lang.String job_id) throws java.rmi.RemoteException
   {
     if (super.cachedEndpoint == null)
     {
@@ -328,12 +347,13 @@ public class JpredSoapBindingStub
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getpredict"));
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getpredict"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {job_id});
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -345,17 +365,16 @@ public class JpredSoapBindingStub
       try
       {
         return (vamsas.objects.simple.Secstructpred) _resp;
-      }
-      catch (java.lang.Exception _exception)
+      } catch (java.lang.Exception _exception)
       {
-        return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.
-            JavaUtils.convert(_resp, vamsas.objects.simple.Secstructpred.class);
+        return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.Secstructpred.class);
       }
     }
   }
 
   public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id)
-      throws java.rmi.RemoteException
+          throws java.rmi.RemoteException
   {
     if (super.cachedEndpoint == null)
     {
@@ -366,12 +385,13 @@ public class JpredSoapBindingStub
     _call.setUseSOAPAction(true);
     _call.setSOAPActionURI("");
     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
-    _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getresult"));
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+            "getresult"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-                                          {job_id});
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[] { job_id });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -383,11 +403,10 @@ public class JpredSoapBindingStub
       try
       {
         return (vamsas.objects.simple.JpredResult) _resp;
-      }
-      catch (java.lang.Exception _exception)
+      } catch (java.lang.Exception _exception)
       {
-        return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.
-            JavaUtils.convert(_resp, vamsas.objects.simple.JpredResult.class);
+        return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils
+                .convert(_resp, vamsas.objects.simple.JpredResult.class);
       }
     }
   }