-/**
- * MuscleWSSoapBindingStub.java
- *
- * This file was auto-generated from WSDL
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
+package ext.vamsas;
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/
+public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
+ implements ext.vamsas.MuscleWS
+{
+ static org.apache.axis.description.OperationDesc[] _operations;
-package ext.vamsas;
+ static
+ {
+ _operations = new org.apache.axis.description.OperationDesc[4];
+ _initOperationDesc1();
+ }
-public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.MuscleWS {
- private java.util.Vector cachedSerClasses = new java.util.Vector();
- private java.util.Vector cachedSerQNames = new java.util.Vector();
- private java.util.Vector cachedSerFactories = new java.util.Vector();
- private java.util.Vector cachedDeserFactories = new java.util.Vector();
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
- static org.apache.axis.description.OperationDesc [] _operations;
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
- static {
- _operations = new org.apache.axis.description.OperationDesc[4];
- _initOperationDesc1();
- }
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
- private static void _initOperationDesc1(){
- org.apache.axis.description.OperationDesc oper;
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("align");
- oper.addParameter(new javax.xml.namespace.QName("", "seqSet"), new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet"), vamsas.objects.simple.SequenceSet.class, org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));
- oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "alignReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[0] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("getalign");
- oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment"));
- oper.setReturnClass(vamsas.objects.simple.Alignment.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[1] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("getResult");
- oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "MsaResult"));
- oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[2] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("cancel");
- oper.addParameter(new javax.xml.namespace.QName("", "jobId"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));
- oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
- oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
- oper.setStyle(org.apache.axis.constants.Style.RPC);
- oper.setUse(org.apache.axis.constants.Use.ENCODED);
- _operations[3] = oper;
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
- }
+ public MuscleWSSoapBindingStub() throws org.apache.axis.AxisFault
+ {
+ this(null);
+ }
- public MuscleWSSoapBindingStub() throws org.apache.axis.AxisFault {
- this(null);
- }
+ public MuscleWSSoapBindingStub(java.net.URL endpointURL,
+ javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+ {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
- public MuscleWSSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
- this(service);
- super.cachedEndpoint = endpointURL;
+ public MuscleWSSoapBindingStub(javax.xml.rpc.Service service)
+ throws org.apache.axis.AxisFault
+ {
+ if (service == null)
+ {
+ super.service = new org.apache.axis.client.Service();
+ }
+ else
+ {
+ super.service = service;
}
- public MuscleWSSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
- if (service == null) {
- super.service = new org.apache.axis.client.Service();
- } else {
- super.service = service;
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ // java.lang.Class enumsf =
+ // org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ // java.lang.Class enumdf =
+ // org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ // java.lang.Class simplesf =
+ // org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ // java.lang.Class simpledf =
+ // org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ // java.lang.Class simplelistsf =
+ // org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+ // java.lang.Class simplelistdf =
+ // org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Sequence");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Sequence.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Sequence[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "MsaResult");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.MsaResult.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "SequenceSet");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.SequenceSet.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+ "Object");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Object.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Alignment");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Alignment.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "WsJobId");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.WsJobId.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
+ cachedSerQNames.add(qName);
+ cls = java.lang.String[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Result.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+ }
+
+ private static void _initOperationDesc1()
+ {
+ org.apache.axis.description.OperationDesc oper;
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("align");
+ oper.addParameter(new javax.xml.namespace.QName("", "seqSet"),
+ new javax.xml.namespace.QName("simple.objects.vamsas",
+ "SequenceSet"),
+ vamsas.objects.simple.SequenceSet.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "WsJobId"));
+ oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "alignReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[0] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getalign");
+ oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "Alignment"));
+ oper.setReturnClass(vamsas.objects.simple.Alignment.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[1] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getResult");
+ oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "MsaResult"));
+ oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[2] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("cancel");
+ oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "WsJobId"));
+ oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[3] = oper;
+ }
+
+ protected org.apache.axis.client.Call createCall()
+ throws java.rmi.RemoteException
+ {
+ try
+ {
+ org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+ .createCall();
+
+ if (super.maintainSessionSet)
+ {
+ _call.setMaintainSession(super.maintainSession);
+ }
+
+ if (super.cachedUsername != null)
+ {
+ _call.setUsername(super.cachedUsername);
+ }
+
+ if (super.cachedPassword != null)
+ {
+ _call.setPassword(super.cachedPassword);
+ }
+
+ if (super.cachedEndpoint != null)
+ {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+
+ if (super.cachedTimeout != null)
+ {
+ _call.setTimeout(super.cachedTimeout);
+ }
+
+ if (super.cachedPortName != null)
+ {
+ _call.setPortName(super.cachedPortName);
+ }
+
+ java.util.Enumeration keys = super.cachedProperties.keys();
+
+ while (keys.hasMoreElements())
+ {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ _call.setProperty(key, super.cachedProperties.get(key));
+ }
+
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this)
+ {
+ if (firstCall())
+ {
+ // must set encoding style before registering serializers
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+
+ for (int i = 0; i < cachedSerFactories.size(); ++i)
+ {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+ .get(i);
+ java.lang.Class sf = (java.lang.Class) cachedSerFactories
+ .get(i);
+ java.lang.Class df = (java.lang.Class) cachedDeserFactories
+ .get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
}
- java.lang.Class cls;
- javax.xml.namespace.QName qName;
- java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
- java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
- java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
- java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
- java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
- java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
- java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
- java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
- java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
- java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Sequence.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Sequence[].class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(arraysf);
- cachedDeserFactories.add(arraydf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "MsaResult");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.MsaResult.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.SequenceSet.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Object");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Object.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Alignment.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.WsJobId.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
- cachedSerQNames.add(qName);
- cls = java.lang.String[].class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(arraysf);
- cachedDeserFactories.add(arraydf);
-
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
- cachedSerQNames.add(qName);
- cls = vamsas.objects.simple.Result.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
+ }
+ return _call;
+ } catch (java.lang.Throwable _t)
+ {
+ throw new org.apache.axis.AxisFault(
+ "Failure trying to get the Call object", _t);
}
-
- protected org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
- try {
- org.apache.axis.client.Call _call =
- (org.apache.axis.client.Call) super.service.createCall();
- if (super.maintainSessionSet) {
- _call.setMaintainSession(super.maintainSession);
- }
- if (super.cachedUsername != null) {
- _call.setUsername(super.cachedUsername);
- }
- if (super.cachedPassword != null) {
- _call.setPassword(super.cachedPassword);
- }
- if (super.cachedEndpoint != null) {
- _call.setTargetEndpointAddress(super.cachedEndpoint);
- }
- if (super.cachedTimeout != null) {
- _call.setTimeout(super.cachedTimeout);
- }
- if (super.cachedPortName != null) {
- _call.setPortName(super.cachedPortName);
- }
- java.util.Enumeration keys = super.cachedProperties.keys();
- while (keys.hasMoreElements()) {
- java.lang.String key = (java.lang.String) keys.nextElement();
- _call.setProperty(key, super.cachedProperties.get(key));
- }
- // All the type mapping information is registered
- // when the first call is made.
- // The type mapping information is actually registered in
- // the TypeMappingRegistry of the service, which
- // is the reason why registration is only needed for the first call.
- synchronized (this) {
- if (firstCall()) {
- // must set encoding style before registering serializers
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
- for (int i = 0; i < cachedSerFactories.size(); ++i) {
- java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
- javax.xml.namespace.QName qName =
- (javax.xml.namespace.QName) cachedSerQNames.get(i);
- java.lang.Class sf = (java.lang.Class)
- cachedSerFactories.get(i);
- java.lang.Class df = (java.lang.Class)
- cachedDeserFactories.get(i);
- _call.registerTypeMapping(cls, qName, sf, df, false);
- }
- }
- }
- return _call;
- }
- catch (java.lang.Throwable _t) {
- throw new org.apache.axis.AxisFault("Failure trying to get the Call object", _t);
- }
+ }
+
+ public vamsas.objects.simple.WsJobId align(
+ vamsas.objects.simple.SequenceSet seqSet)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
}
- public vamsas.objects.simple.WsJobId align(vamsas.objects.simple.SequenceSet seqSet) throws java.rmi.RemoteException {
- if (super.cachedEndpoint == null) {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[0]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] {seqSet});
-
- if (_resp instanceof java.rmi.RemoteException) {
- throw (java.rmi.RemoteException)_resp;
- }
- else {
- extractAttachments(_call);
- try {
- return (vamsas.objects.simple.WsJobId) _resp;
- } catch (java.lang.Exception _exception) {
- return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);
- }
- }
- }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[0]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align"));
- public vamsas.objects.simple.Alignment getalign(java.lang.String job_id) throws java.rmi.RemoteException {
- if (super.cachedEndpoint == null) {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[1]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getalign"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});
-
- if (_resp instanceof java.rmi.RemoteException) {
- throw (java.rmi.RemoteException)_resp;
- }
- else {
- extractAttachments(_call);
- try {
- return (vamsas.objects.simple.Alignment) _resp;
- } catch (java.lang.Exception _exception) {
- return (vamsas.objects.simple.Alignment) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.Alignment.class);
- }
- }
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call
+ .invoke(new java.lang.Object[] { seqSet });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.WsJobId) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.WsJobId.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
}
- public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id) throws java.rmi.RemoteException {
- if (super.cachedEndpoint == null) {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[2]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getResult"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});
-
- if (_resp instanceof java.rmi.RemoteException) {
- throw (java.rmi.RemoteException)_resp;
- }
- else {
- extractAttachments(_call);
- try {
- return (vamsas.objects.simple.MsaResult) _resp;
- } catch (java.lang.Exception _exception) {
- return (vamsas.objects.simple.MsaResult) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.MsaResult.class);
- }
- }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[1]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+ "getalign"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call
+ .invoke(new java.lang.Object[] { job_id });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.Alignment) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.Alignment) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.Alignment.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
}
- public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId) throws java.rmi.RemoteException {
- if (super.cachedEndpoint == null) {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[3]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("");
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobId});
-
- if (_resp instanceof java.rmi.RemoteException) {
- throw (java.rmi.RemoteException)_resp;
- }
- else {
- extractAttachments(_call);
- try {
- return (vamsas.objects.simple.WsJobId) _resp;
- } catch (java.lang.Exception _exception) {
- return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);
- }
- }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[2]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+ "getResult"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call
+ .invoke(new java.lang.Object[] { job_id });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.MsaResult) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.MsaResult) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.MsaResult.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
}
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[3]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.WsJobId) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.WsJobId.class);
+ }
+ }
+ }
}
git://source.jalview.org / jalview.git / blobdiff