-/**
- * MuscleWSSoapBindingStub.java
- *
- * This file was auto-generated from WSDL
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */\r
-\r
/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package ext.vamsas;\r
-\r
-public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub\r
- implements ext.vamsas.MuscleWS {\r
- static org.apache.axis.description.OperationDesc[] _operations;\r
-\r
- static {\r
- _operations = new org.apache.axis.description.OperationDesc[4];\r
- _initOperationDesc1();\r
- }\r
-\r
- private java.util.Vector cachedSerClasses = new java.util.Vector();\r
- private java.util.Vector cachedSerQNames = new java.util.Vector();\r
- private java.util.Vector cachedSerFactories = new java.util.Vector();\r
- private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
-\r
- public MuscleWSSoapBindingStub() throws org.apache.axis.AxisFault {\r
- this(null);\r
- }\r
-\r
- public MuscleWSSoapBindingStub(java.net.URL endpointURL,\r
- javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {\r
- this(service);\r
- super.cachedEndpoint = endpointURL;\r
- }\r
-\r
- public MuscleWSSoapBindingStub(javax.xml.rpc.Service service)\r
- throws org.apache.axis.AxisFault {\r
- if (service == null) {\r
- super.service = new org.apache.axis.client.Service();\r
- } else {\r
- super.service = service;\r
- }\r
-\r
- java.lang.Class cls;\r
- javax.xml.namespace.QName qName;\r
- java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
- java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
- //java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
- //java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
- java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
- java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
- //java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
- // java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
- //java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
- //java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
- "Sequence");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.Sequence.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.Sequence[].class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(arraysf);\r
- cachedDeserFactories.add(arraydf);\r
-\r
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
- "MsaResult");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.MsaResult.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
- "SequenceSet");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.SequenceSet.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",\r
- "Object");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.Object.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
- "Alignment");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.Alignment.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.WsJobId.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");\r
- cachedSerQNames.add(qName);\r
- cls = java.lang.String[].class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(arraysf);\r
- cachedDeserFactories.add(arraydf);\r
-\r
- qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");\r
- cachedSerQNames.add(qName);\r
- cls = vamsas.objects.simple.Result.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
- }\r
-\r
- private static void _initOperationDesc1() {\r
- org.apache.axis.description.OperationDesc oper;\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("align");\r
- oper.addParameter(new javax.xml.namespace.QName("", "seqSet"),\r
- new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet"),\r
- vamsas.objects.simple.SequenceSet.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "simple.objects.vamsas", "WsJobId"));\r
- oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("", "alignReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.RPC);\r
- oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
- _operations[0] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("getalign");\r
- oper.addParameter(new javax.xml.namespace.QName("", "job_id"),\r
- new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema",\r
- "string"), java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "simple.objects.vamsas", "Alignment"));\r
- oper.setReturnClass(vamsas.objects.simple.Alignment.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("", "getalignReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.RPC);\r
- oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
- _operations[1] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("getResult");\r
- oper.addParameter(new javax.xml.namespace.QName("", "job_id"),\r
- new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema",\r
- "string"), java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "simple.objects.vamsas", "MsaResult"));\r
- oper.setReturnClass(vamsas.objects.simple.MsaResult.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.RPC);\r
- oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
- _operations[2] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("cancel");\r
- oper.addParameter(new javax.xml.namespace.QName("", "jobId"),\r
- new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema",\r
- "string"), java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "simple.objects.vamsas", "WsJobId"));\r
- oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.RPC);\r
- oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
- _operations[3] = oper;\r
- }\r
-\r
- protected org.apache.axis.client.Call createCall()\r
- throws java.rmi.RemoteException {\r
- try {\r
- org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service.createCall();\r
-\r
- if (super.maintainSessionSet) {\r
- _call.setMaintainSession(super.maintainSession);\r
- }\r
-\r
- if (super.cachedUsername != null) {\r
- _call.setUsername(super.cachedUsername);\r
- }\r
-\r
- if (super.cachedPassword != null) {\r
- _call.setPassword(super.cachedPassword);\r
- }\r
-\r
- if (super.cachedEndpoint != null) {\r
- _call.setTargetEndpointAddress(super.cachedEndpoint);\r
- }\r
-\r
- if (super.cachedTimeout != null) {\r
- _call.setTimeout(super.cachedTimeout);\r
- }\r
-\r
- if (super.cachedPortName != null) {\r
- _call.setPortName(super.cachedPortName);\r
- }\r
-\r
- java.util.Enumeration keys = super.cachedProperties.keys();\r
-\r
- while (keys.hasMoreElements()) {\r
- java.lang.String key = (java.lang.String) keys.nextElement();\r
- _call.setProperty(key, super.cachedProperties.get(key));\r
- }\r
-\r
- // All the type mapping information is registered\r
- // when the first call is made.\r
- // The type mapping information is actually registered in\r
- // the TypeMappingRegistry of the service, which\r
- // is the reason why registration is only needed for the first call.\r
- synchronized (this) {\r
- if (firstCall()) {\r
- // must set encoding style before registering serializers\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);\r
-\r
- for (int i = 0; i < cachedSerFactories.size(); ++i) {\r
- java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
- javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames.get(i);\r
- java.lang.Class sf = (java.lang.Class) cachedSerFactories.get(i);\r
- java.lang.Class df = (java.lang.Class) cachedDeserFactories.get(i);\r
- _call.registerTypeMapping(cls, qName, sf, df, false);\r
- }\r
- }\r
- }\r
-\r
- return _call;\r
- } catch (java.lang.Throwable _t) {\r
- throw new org.apache.axis.AxisFault("Failure trying to get the Call object",\r
- _t);\r
- }\r
- }\r
-\r
- public vamsas.objects.simple.WsJobId align(\r
- vamsas.objects.simple.SequenceSet seqSet)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[0]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "align"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seqSet });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (vamsas.objects.simple.WsJobId) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- vamsas.objects.simple.WsJobId.class);\r
- }\r
- }\r
- }\r
-\r
- public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[1]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
- "getalign"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { job_id });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (vamsas.objects.simple.Alignment) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (vamsas.objects.simple.Alignment) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- vamsas.objects.simple.Alignment.class);\r
- }\r
- }\r
- }\r
-\r
- public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[2]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
- "getResult"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { job_id });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (vamsas.objects.simple.MsaResult) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (vamsas.objects.simple.MsaResult) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- vamsas.objects.simple.MsaResult.class);\r
- }\r
- }\r
- }\r
-\r
- public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)\r
- throws java.rmi.RemoteException {\r
- if (super.cachedEndpoint == null) {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
-\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[3]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("");\r
- _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
-\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });\r
-\r
- if (_resp instanceof java.rmi.RemoteException) {\r
- throw (java.rmi.RemoteException) _resp;\r
- } else {\r
- extractAttachments(_call);\r
-\r
- try {\r
- return (vamsas.objects.simple.WsJobId) _resp;\r
- } catch (java.lang.Exception _exception) {\r
- return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp,\r
- vamsas.objects.simple.WsJobId.class);\r
- }\r
- }\r
- }\r
-}\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ */
+package ext.vamsas;
+
+public class MuscleWSSoapBindingStub extends org.apache.axis.client.Stub
+ implements ext.vamsas.MuscleWS
+{
+ static org.apache.axis.description.OperationDesc[] _operations;
+
+ static
+ {
+ _operations = new org.apache.axis.description.OperationDesc[4];
+ _initOperationDesc1();
+ }
+
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
+
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
+
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
+
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+ public MuscleWSSoapBindingStub() throws org.apache.axis.AxisFault
+ {
+ this(null);
+ }
+
+ public MuscleWSSoapBindingStub(java.net.URL endpointURL,
+ javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+ {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
+
+ public MuscleWSSoapBindingStub(javax.xml.rpc.Service service)
+ throws org.apache.axis.AxisFault
+ {
+ if (service == null)
+ {
+ super.service = new org.apache.axis.client.Service();
+ }
+ else
+ {
+ super.service = service;
+ }
+
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ // java.lang.Class enumsf =
+ // org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ // java.lang.Class enumdf =
+ // org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ // java.lang.Class simplesf =
+ // org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ // java.lang.Class simpledf =
+ // org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ // java.lang.Class simplelistsf =
+ // org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+ // java.lang.Class simplelistdf =
+ // org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Sequence");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Sequence.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Sequence[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "MsaResult");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.MsaResult.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "SequenceSet");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.SequenceSet.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
+ "Object");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Object.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "Alignment");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Alignment.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas",
+ "WsJobId");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.WsJobId.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
+ cachedSerQNames.add(qName);
+ cls = java.lang.String[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
+ cachedSerQNames.add(qName);
+ cls = vamsas.objects.simple.Result.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+ }
+
+ private static void _initOperationDesc1()
+ {
+ org.apache.axis.description.OperationDesc oper;
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("align");
+ oper.addParameter(new javax.xml.namespace.QName("", "seqSet"),
+ new javax.xml.namespace.QName("simple.objects.vamsas",
+ "SequenceSet"),
+ vamsas.objects.simple.SequenceSet.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "WsJobId"));
+ oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "alignReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[0] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getalign");
+ oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "Alignment"));
+ oper.setReturnClass(vamsas.objects.simple.Alignment.class);
+ oper
+ .setReturnQName(new javax.xml.namespace.QName("",
+ "getalignReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[1] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getResult");
+ oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "MsaResult"));
+ oper.setReturnClass(vamsas.objects.simple.MsaResult.class);
+ oper
+ .setReturnQName(new javax.xml.namespace.QName("",
+ "getResultReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[2] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("cancel");
+ oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
+ new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "simple.objects.vamsas", "WsJobId"));
+ oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.RPC);
+ oper.setUse(org.apache.axis.constants.Use.ENCODED);
+ _operations[3] = oper;
+ }
+
+ protected org.apache.axis.client.Call createCall()
+ throws java.rmi.RemoteException
+ {
+ try
+ {
+ org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+ .createCall();
+
+ if (super.maintainSessionSet)
+ {
+ _call.setMaintainSession(super.maintainSession);
+ }
+
+ if (super.cachedUsername != null)
+ {
+ _call.setUsername(super.cachedUsername);
+ }
+
+ if (super.cachedPassword != null)
+ {
+ _call.setPassword(super.cachedPassword);
+ }
+
+ if (super.cachedEndpoint != null)
+ {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+
+ if (super.cachedTimeout != null)
+ {
+ _call.setTimeout(super.cachedTimeout);
+ }
+
+ if (super.cachedPortName != null)
+ {
+ _call.setPortName(super.cachedPortName);
+ }
+
+ java.util.Enumeration keys = super.cachedProperties.keys();
+
+ while (keys.hasMoreElements())
+ {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ _call.setProperty(key, super.cachedProperties.get(key));
+ }
+
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this)
+ {
+ if (firstCall())
+ {
+ // must set encoding style before registering serializers
+ _call
+ .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+
+ for (int i = 0; i < cachedSerFactories.size(); ++i)
+ {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+ .get(i);
+ java.lang.Class sf = (java.lang.Class) cachedSerFactories
+ .get(i);
+ java.lang.Class df = (java.lang.Class) cachedDeserFactories
+ .get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ }
+ }
+
+ return _call;
+ } catch (java.lang.Throwable _t)
+ {
+ throw new org.apache.axis.AxisFault(
+ "Failure trying to get the Call object", _t);
+ }
+ }
+
+ public vamsas.objects.simple.WsJobId align(
+ vamsas.objects.simple.SequenceSet seqSet)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[0]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call
+ .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call
+ .setOperationName(new javax.xml.namespace.QName("vamsas",
+ "align"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { seqSet });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.WsJobId) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.WsJobId.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.Alignment getalign(java.lang.String job_id)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[1]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call
+ .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+ "getalign"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { job_id });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.Alignment) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.Alignment) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.Alignment.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.MsaResult getResult(java.lang.String job_id)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[2]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call
+ .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas",
+ "getResult"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { job_id });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.MsaResult) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.MsaResult) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.MsaResult.class);
+ }
+ }
+ }
+
+ public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[3]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call
+ .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call
+ .setOperationName(new javax.xml.namespace.QName("vamsas",
+ "cancel"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { jobId });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+
+ try
+ {
+ return (vamsas.objects.simple.WsJobId) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
+ .convert(_resp, vamsas.objects.simple.WsJobId.class);
+ }
+ }
+ }
+}
git://source.jalview.org / jalview.git / blobdiff