JAL-3253-applet JAL-3397

[jalview.git] / src / intervalstore / nonc / IntervalStoreImpl.java

diff --git a/src/intervalstore/nonc/IntervalStoreImpl.java b/src/intervalstore/nonc/IntervalStoreImpl.java
index 7cc5f1b..8456b7f 100644 (file)
--- a/src/intervalstore/nonc/IntervalStoreImpl.java
+++ b/src/intervalstore/nonc/IntervalStoreImpl.java
@@ -70,7 +70,8 @@ public class IntervalStoreImpl<T> extends IntervalStore
   protected boolean sameInterval(IntervalI i1, IntervalI i2)
   {
     // avoiding equals() for JavaScript performance
-    return ((SequenceFeature) i1).equals((SequenceFeature) i2, false);
+    // could be CrossRef with ignoreParent==true
+    return ((SequenceFeature) i1).equalsWithParent((SequenceFeature) i2);
   }
 
 }