sequences are private in SequenceGroup

[jalview.git] / src / jalview / analysis / AlignmentSorter.java

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index 20101dc..c2814b8 100755 (executable)
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -184,7 +184,7 @@ public class AlignmentSorter
             {\r
                 SequenceGroup sg2 = (SequenceGroup) groups.elementAt(j);\r
 \r
-                if (sg.getSize() > sg2.getSize())\r
+                if (sg.getSize(false) > sg2.getSize(false))\r
                 {\r
                     groups.insertElementAt(sg, j);\r
 \r