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JAL-1807 explicit imports (jalview.analysis)
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignmentSorter.java
diff --git
a/src/jalview/analysis/AlignmentSorter.java
b/src/jalview/analysis/AlignmentSorter.java
index
4f7f2e2
..
e960e63
100755
(executable)
--- a/
src/jalview/analysis/AlignmentSorter.java
+++ b/
src/jalview/analysis/AlignmentSorter.java
@@
-607,7
+607,7
@@
public class AlignmentSorter
.floatValue();
}
.floatValue();
}
- jalview.util.QuickSort.sortFloat(ids, alignment);
+ QuickSort.sortFloat(ids, alignment);
}
/**
}
/**
@@
-674,7
+674,7
@@
public class AlignmentSorter
}
}
}
}
- jalview.util.QuickSort.sortDouble(scores, seqs);
+ QuickSort.sortDouble(scores, seqs);
if (lastSortByScore != scoreLabel)
{
lastSortByScore = scoreLabel;
if (lastSortByScore != scoreLabel)
{
lastSortByScore = scoreLabel;
@@
-854,7
+854,7
@@
public class AlignmentSorter
labs[l] = (fs[l].getDescription() != null ? fs[l]
.getDescription() : fs[l].getType());
}
labs[l] = (fs[l].getDescription() != null ? fs[l]
.getDescription() : fs[l].getType());
}
- jalview.util.QuickSort.sort(labs, ((Object[]) feats[i]));
+ QuickSort.sort(labs, ((Object[]) feats[i]));
}
}
if (hasScore[i])
}
}
if (hasScore[i])
@@
-905,7
+905,7
@@
public class AlignmentSorter
}
}
}
}
- jalview.util.QuickSort.sortDouble(scores, seqs);
+ QuickSort.sortDouble(scores, seqs);
}
else if (method == FEATURE_DENSITY)
{
}
else if (method == FEATURE_DENSITY)
{
@@
-922,7
+922,7
@@
public class AlignmentSorter
// System.err.println("Sorting on Density: seq "+seqs[i].getName()+
// " Feats: "+nf+" Score : "+scores[i]);
}
// System.err.println("Sorting on Density: seq "+seqs[i].getName()+
// " Feats: "+nf+" Score : "+scores[i]);
}
- jalview.util.QuickSort.sortDouble(scores, seqs);
+ QuickSort.sortDouble(scores, seqs);
}
else
{
}
else
{