JAL-2189 source formatting

[jalview.git] / src / jalview / analysis / CrossRef.java

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index cd71bbd..4ba7e41 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -220,8 +220,7 @@ public class CrossRef
 
     rseqs = new ArrayList<SequenceI>();
     AlignedCodonFrame cf = new AlignedCodonFrame();
-    matcher = new SequenceIdMatcher(
-            dataset.getSequences());
+    matcher = new SequenceIdMatcher(dataset.getSequences());
 
     for (SequenceI seq : fromSeqs)
     {
@@ -630,8 +629,7 @@ public class CrossRef
                      * attribute in equality test; this avoids creating many
                      * otherwise duplicate exon features on genomic sequence
                      */
-                    SequenceFeature newFeature = new SequenceFeature(
-                            feat)
+                    SequenceFeature newFeature = new SequenceFeature(feat)
                     {
                       @Override
                       public boolean equals(Object o)
@@ -667,6 +665,7 @@ public class CrossRef
     }
     return imported;
   }
+
   /**
    * Sets the inverse sequence mapping in the corresponding dbref of the mapped
    * to sequence (if any). This is used after fetching a cross-referenced
@@ -866,8 +865,8 @@ public class CrossRef
     MapList mapping = null;
     SequenceI dsmapFrom = mapFrom.getDatasetSequence() == null ? mapFrom
             : mapFrom.getDatasetSequence();
-    SequenceI dsmapTo = mapTo.getDatasetSequence() == null ? mapTo
-            : mapTo.getDatasetSequence();
+    SequenceI dsmapTo = mapTo.getDatasetSequence() == null ? mapTo : mapTo
+            .getDatasetSequence();
     /*
      * look for a reverse mapping, if found make its inverse. 
      * Note - we do this on dataset sequences only.