protein.toString());
if (rf != 0)
{
- jalview.bin.Cache.log
- .debug("trimming contigs for incomplete terminal codon.");
+ if (jalview.bin.Cache.log!=null) {
+ jalview.bin.Cache.log.debug("trimming contigs for incomplete terminal codon.");
+ } else {
+ System.err.println("trimming contigs for incomplete terminal codon.");
+ }
// map and trim contigs to ORF region
vc = scontigs.length - 1;
lastnpos = vismapping.shift(lastnpos); // place npos in context of