Merge branch 'features/JAL-2435splitScreenFont' into develop

[jalview.git] / src / jalview / appletgui / AlignViewport.java

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index ebfd6f0..9629a5f 100644 (file)
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -27,6 +27,7 @@ import jalview.bin.JalviewLite;
 import jalview.commands.CommandI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SearchResults;
 import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.Sequence;
@@ -39,7 +40,6 @@ import jalview.structure.SelectionSource;
 import jalview.structure.StructureSelectionManager;
 import jalview.structure.VamsasSource;
 import jalview.viewmodel.AlignmentViewport;
-import jalview.viewmodel.ViewportRanges;
 
 import java.awt.Font;
 import java.awt.FontMetrics;
@@ -72,11 +72,10 @@ public class AlignViewport extends AlignmentViewport implements
 
   public AlignViewport(AlignmentI al, JalviewLite applet)
   {
-    super();
+    super(al);
     calculator = new jalview.workers.AlignCalcManager();
     this.applet = applet;
-    alignment = al;
-    ranges = new ViewportRanges(this.alignment);
+
     // we always pad gaps
     this.setPadGaps(true);
 
@@ -344,7 +343,8 @@ public class AlignViewport extends AlignmentViewport implements
   {
     getStructureSelectionManager().sendSelection(
             new SequenceGroup(getSelectionGroup()),
-            new ColumnSelection(getColumnSelection()), this);
+            new ColumnSelection(getColumnSelection()),
+            new HiddenColumns(getAlignment().getHiddenColumns()), this);
   }
 
   /**