private void setColourScheme(ColourSchemeI cs)
{
- jmb.setJalviewColourScheme(cs, ap);
+ jmb.setJalviewColourScheme(cs, ap, ap.av.isShowSequenceFeatures());
}
/**
else if (evt.getSource() == seqColour)
{
setEnabled(seqColour);
- jmb.colourBySequence(ap);
+ jmb.colourBySequence(ap, ap.av.isShowSequenceFeatures());
}
else if (!allChainsSelected)
{
public void updateColours(Object source)
{
AlignmentPanel panel = (AlignmentPanel) source;
- jmb.colourBySequence(panel);
+ jmb.colourBySequence(panel, ap.av.isShowSequenceFeatures());
}
public void updateTitleAndMenus()
return;
}
setChainMenuItems(jmb.getChainNames());
- jmb.colourBySequence(ap);
+ jmb.colourBySequence(ap, ap.av.isShowSequenceFeatures());
setTitle(jmb.getViewerTitle());
}