JAL-3390 Chimera showStructures() respects visible/chain selections

[jalview.git] / src / jalview / appletgui / AppletJmol.java

diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java
index 3d1442d..f5ab595 100644 (file)
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -406,7 +406,8 @@ public class AppletJmol extends EmbmenuFrame implements
         }
       }
     }
-    jmb.centerViewer(toshow);
+    jmb.setChainsToShow(toshow);
+    jmb.centerViewer();
   }
 
   void closeViewer()