/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
-import java.util.*;
-
-import java.awt.*;
-import java.awt.event.*;
-
-import jalview.datamodel.*;
-import jalview.schemes.*;
-import java.awt.Rectangle;
+import jalview.datamodel.GraphLine;
+import jalview.schemes.AnnotationColourGradient;
+import jalview.schemes.GraduatedColor;
+import jalview.util.MessageManager;
+
+import java.awt.Checkbox;
+import java.awt.Choice;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.FlowLayout;
+import java.awt.Font;
+import java.awt.Frame;
+import java.awt.GridLayout;
+import java.awt.Label;
+import java.awt.Panel;
+import java.awt.Scrollbar;
+import java.awt.TextField;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.AdjustmentEvent;
+import java.awt.event.AdjustmentListener;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.util.Hashtable;
public class FeatureColourChooser extends Panel implements ActionListener,
AdjustmentListener, ItemListener, MouseListener
{
this.type = type;
fr = frenderer;
- float mm[] = ((float[][]) fr.minmax.get(type))[0];
+ float mm[] = ((float[][]) fr.getMinMax().get(type))[0];
min = mm[0];
max = mm[1];
- oldcs = fr.featureColours.get(type);
+ oldcs = fr.getFeatureColours().get(type);
if (oldcs instanceof GraduatedColor)
{
cs = new GraduatedColor((GraduatedColor) oldcs, min, max);
slider.addAdjustmentListener(this);
slider.addMouseListener(this);
owner = (af != null) ? af : fs.frame;
- frame = new JVDialog(owner, "Graduated Feature Colour for " + type,
+ frame = new JVDialog(owner, MessageManager.formatMessage(
+ "label.graduated_color_for_params", new String[] { type }),
true, 480, 248);
frame.setMainPanel(this);
validate();
{
// cancel
reset();
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
frame.setVisible(false);
}
}
private void jbInit() throws Exception
{
- Label minLabel = new Label("Min:"), maxLabel = new Label("Max:");
+ Label minLabel = new Label(MessageManager.getString("label.min")), maxLabel = new Label(
+ MessageManager.getString("label.max"));
minLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
maxLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
// minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
jPanel2.setBackground(Color.white);
jPanel4.setBackground(Color.white);
threshold.addItemListener(this);
- threshold.addItem("No Threshold");
- threshold.addItem("Above Threshold");
- threshold.addItem("Below Threshold");
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_no_thereshold"));
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_above_thereshold"));
+ threshold.addItem(MessageManager
+ .getString("label.threshold_feature_below_thereshold"));
thresholdValue.addActionListener(this);
slider.setBackground(Color.white);
slider.setEnabled(false);
jPanel3.setBackground(Color.white);
colourFromLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- colourFromLabel.setLabel("Colour by Label");
+ colourFromLabel.setLabel(MessageManager
+ .getString("label.colour_by_label"));
colourFromLabel.setSize(new Dimension(139, 22));
// threshold.setBounds(new Rectangle(11, 3, 139, 22));
thresholdIsMin.setBackground(Color.white);
- thresholdIsMin.setLabel("Threshold is min/max");
+ thresholdIsMin.setLabel(MessageManager
+ .getString("label.threshold_minmax"));
thresholdIsMin.setSize(new Dimension(135, 23));
// thresholdIsMin.setBounds(new Rectangle(328, 3, 135, 23));
jPanel1.add(minLabel);
threshline.value = (float) slider.getValue() / 1000f;
cs.setThresh(threshline.value);
changeColour();
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
// ap.paintAlignment(false);
}
{
UserDefinedColours udc = new UserDefinedColours(this,
minColour.getBackground(), owner,
- "Select Colour for Minimum Value"); // frame.owner,
+ MessageManager.getString("label.select_colour_minimum_value")); // frame.owner,
}
else
{
// "Select Colour for Maximum Value",maxColour.getBackground(),true);
UserDefinedColours udc = new UserDefinedColours(this,
maxColour.getBackground(), owner,
- "Select Colour for Maximum Value");
+ MessageManager.getString("label.select_colour_maximum_value"));
}
else
{
}
int aboveThreshold = AnnotationColourGradient.NO_THRESHOLD;
- if (threshold.getSelectedItem().equals("Above Threshold"))
+ if (threshold.getSelectedIndex() == 1)
{
aboveThreshold = AnnotationColourGradient.ABOVE_THRESHOLD;
}
- else if (threshold.getSelectedItem().equals("Below Threshold"))
+ else if (threshold.getSelectedIndex() == 2)
{
aboveThreshold = AnnotationColourGradient.BELOW_THRESHOLD;
}
}
}
- fr.featureColours.put(type, acg);
+ fr.setColour(type, acg);
cs = acg;
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
// ap.paintAlignment(false);
}
void reset()
{
- fr.featureColours.put(type, oldcs);
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ fr.setColour(type, oldcs);
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
// ap.paintAlignment(true);
}
}
else
{
- PaintRefresher.Refresh(this, fr.av.getSequenceSetId());
+ PaintRefresher.Refresh(this, fr.getViewport().getSequenceSetId());
}
// ap.paintAlignment(true);
}
git://source.jalview.org / jalview.git / blobdiff