JAL-2808 update spike to latest (filter range, Present option)

[jalview.git] / src / jalview / appletgui / FeatureSettings.java

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 39a2747..ad04171 100755 (executable)
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -20,15 +20,12 @@
  */
 package jalview.appletgui;
 
-import static jalview.viewmodel.seqfeatures.FeatureRendererModel.COLOUR_COLUMN;
-import static jalview.viewmodel.seqfeatures.FeatureRendererModel.SHOW_COLUMN;
-import static jalview.viewmodel.seqfeatures.FeatureRendererModel.TYPE_COLUMN;
-
 import jalview.api.FeatureColourI;
 import jalview.api.FeatureSettingsControllerI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
 import jalview.util.MessageManager;
+import jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean;
 
 import java.awt.BorderLayout;
 import java.awt.Button;
@@ -587,27 +584,19 @@ public class FeatureSettings extends Panel
   {
     Component[] comps = featurePanel.getComponents();
     int cSize = comps.length;
-
-    /*
-     * temporary! leave column[2] empty - used for Filter in
-     * gui.FeatureSettings
-     */
-    int columnCount = 4;
-    Object[][] tmp = new Object[cSize][columnCount];
-    int tmpSize = 0;
-    for (int i = 0; i < cSize; i++)
-    {
-      MyCheckbox check = (MyCheckbox) comps[i];
-      tmp[tmpSize][TYPE_COLUMN /* 0 */] = check.type;
-      tmp[tmpSize][COLOUR_COLUMN /* 1 */] = fr.getFeatureStyle(check.type);
-      tmp[tmpSize][SHOW_COLUMN /* 3 */] = new Boolean(check.getState());
-      tmpSize++;
+    FeatureSettingsBean[] rowData = new FeatureSettingsBean[cSize];
+    int i = 0;
+    for (Component comp : comps)
+    {
+      MyCheckbox check = (MyCheckbox) comp;
+      // feature filter set to null as not (yet) offered in applet
+      FeatureColourI colour = fr.getFeatureStyle(check.type);
+      rowData[i] = new FeatureSettingsBean(check.type, colour, null,
+              check.getState());
+      i++;
     }
 
-    Object[][] data = new Object[tmpSize][columnCount];
-    System.arraycopy(tmp, 0, data, 0, tmpSize);
-
-    fr.setFeaturePriority(data);
+    fr.setFeaturePriority(rowData);
 
     ap.paintAlignment(updateOverview, updateOverview);
   }