JAL-2738 update spike branch with latest

[jalview.git] / src / jalview / appletgui / IdPanel.java

diff --git a/src/jalview/appletgui/IdPanel.java b/src/jalview/appletgui/IdPanel.java
index 7d9d278..15e269c 100755 (executable)
--- a/src/jalview/appletgui/IdPanel.java
+++ b/src/jalview/appletgui/IdPanel.java
@@ -70,7 +70,7 @@ public class IdPanel extends Panel
     // TODO: add in group link parameter
 
     // make a list of label,url pairs
-    HashMap<String, String> urlList = new HashMap<String, String>();
+    HashMap<String, String> urlList = new HashMap<>();
     if (viewport.applet != null)
     {
       for (int i = 1; i < 10; i++)
@@ -198,7 +198,7 @@ public class IdPanel extends Panel
     }
 
     lastid = seq;
-    alignPanel.paintAlignment(false);
+    alignPanel.paintAlignment(false, false);
   }
 
   @Override
@@ -295,7 +295,7 @@ public class IdPanel extends Panel
       }
       else
       {
-        nlinks = new ArrayList<String>();
+        nlinks = new ArrayList<>();
       }
 
       for (SequenceFeature sf : sq.getFeatures().getNonPositionalFeatures())
@@ -333,7 +333,7 @@ public class IdPanel extends Panel
       selectSeq(seq);
     }
 
-    alignPanel.paintAlignment(false);
+    alignPanel.paintAlignment(false, false);
   }
 
   void selectSeq(int seq)
@@ -459,7 +459,7 @@ public class IdPanel extends Panel
           running = false;
         }
 
-        alignPanel.paintAlignment(true);
+        alignPanel.paintAlignment(true, false);
         try
         {
           Thread.sleep(100);