JAL-2388 Make startRes,startSeq,endRes,endSeq private with get/setters

[jalview.git] / src / jalview / appletgui / OverviewPanel.java

diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java
index 1b6df1d..0d3f058 100755 (executable)
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -253,7 +253,6 @@ public class OverviewPanel extends Panel implements Runnable,
       if ((int) (row * sampleRow) == lastrow)
       {
         sameRow++;
-        continue;
       }
       else
       {
@@ -261,10 +260,13 @@ public class OverviewPanel extends Panel implements Runnable,
         hiddenRow = false;
         if (hasHiddenRows)
         {
+          // look for sequence in hidden rows
           seq = av.getAlignment().getHiddenSequences()
                   .getHiddenSequence(lastrow);
           if (seq == null)
           {
+            // didn't find in hidden rows, adjust the index and retrieve from
+            // full row set
             int index = av.getAlignment().getHiddenSequences()
                     .findIndexWithoutHiddenSeqs(lastrow);
 
@@ -272,6 +274,7 @@ public class OverviewPanel extends Panel implements Runnable,
           }
           else
           {
+            // found in hidden rows, ergo this row is hidden
             hiddenRow = true;
           }
         }