sequences are private in SequenceGroup

[jalview.git] / src / jalview / appletgui / PairwiseAlignPanel.java

diff --git a/src/jalview/appletgui/PairwiseAlignPanel.java b/src/jalview/appletgui/PairwiseAlignPanel.java
index 0dd3253..d0b0c98 100755 (executable)
--- a/src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/src/jalview/appletgui/PairwiseAlignPanel.java
@@ -47,7 +47,7 @@ public class PairwiseAlignPanel
     float scores[][] = new float[ap.av.alignment.getHeight()][ap.av.alignment.\r
         getHeight()];\r
     double totscore = 0;\r
-    int count = ap.av.getSelectionGroup().getSize();\r
+    int count = ap.av.getSelectionGroup().getSize(false);\r
 \r
     int acount = 0;\r
     Sequence seq;\r