Formatting changes

[jalview.git] / src / jalview / appletgui / SeqCanvas.java

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 5aa5d66..29616ef 100755 (executable)
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -374,7 +374,7 @@ public class SeqCanvas
       sr.drawSequence(g, nextSeq, av.alignment.findAllGroups(nextSeq), x1, x2,\r
                       (x1 - startx) * av.charWidth,\r
                       offset +\r
-                      AlignmentUtil.getPixelHeight(starty, i, av.charHeight),\r
+                      (i-starty)*av.charHeight,\r
                       av.charWidth, av.charHeight);\r
 \r
       if (av.showSequenceFeatures)\r
@@ -382,7 +382,7 @@ public class SeqCanvas
         fr.drawSequence(g, nextSeq, av.alignment.findAllGroups(nextSeq), x1, x2,\r
                         (x1 - startx) * av.charWidth,\r
                         offset +\r
-                        AlignmentUtil.getPixelHeight(starty, i, av.charHeight),\r
+                        (i-starty)*av.charHeight,\r
                         av.charWidth, av.charHeight);\r
       }\r
     }\r
@@ -413,7 +413,7 @@ public class SeqCanvas
         for (i = y1; i < y2; i++)\r
         {\r
           sx = (group.getStartRes() - startx) * av.charWidth;\r
-          sy = offset + AlignmentUtil.getPixelHeight(starty, i, av.charHeight);\r
+          sy = offset + (i-starty)*av.charHeight;\r
           ex = (group.getEndRes() + 1 - group.getStartRes()) * av.charWidth - 1;\r
 \r
           if (sx < getSize().width\r
@@ -484,7 +484,7 @@ public class SeqCanvas
             bottom = -1;\r
 \r
           }\r
-          sy = offset + AlignmentUtil.getPixelHeight(starty, i, av.charHeight);\r
+          sy = offset + (i-starty)*av.charHeight;\r
           g.drawLine(sx, oldY, sx, sy);\r
           g.drawLine(sx + ex, oldY, sx + ex, sy);\r
           inGroup = false;\r
@@ -531,9 +531,7 @@ public class SeqCanvas
                                   searchEnd,\r
                                   (searchStart - startx) * av.charWidth,\r
                                   offset +\r
-                                  AlignmentUtil.getPixelHeight(starty,\r
-              searchSeq,\r
-              av.charHeight),\r
+                                  (searchSeq-starty)*av.charHeight,\r
                                   av.charWidth,\r
                                   av.charHeight);\r
         }\r