JAL-1432 updated copyright notices

[jalview.git] / src / jalview / appletgui / SeqPanel.java

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index 5238750..429183d 100644 (file)
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -14,6 +14,7 @@
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.appletgui;
 
@@ -146,7 +147,7 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     SequenceI sequence = (Sequence) av.getAlignment().getSequenceAt(
             seqCanvas.cursorY);
 
-    seqCanvas.cursorX = sequence.findIndex(getKeyboardNo1() - 1);
+    seqCanvas.cursorX = sequence.findIndex(getKeyboardNo1()) - 1;
     scrollToVisible();
   }
 
@@ -342,31 +343,35 @@ public class SeqPanel extends Panel implements MouseMotionListener,
       keyboardNo1.append(value);
     }
   }
-
   int getKeyboardNo1()
   {
-    if (keyboardNo1 == null)
-      return 1;
-    else
+    try {
+    if (keyboardNo1 != null) 
     {
       int value = Integer.parseInt(keyboardNo1.toString());
       keyboardNo1 = null;
       return value;
     }
+    } catch (Exception x)
+    {}
+    keyboardNo1 = null;
+    return 1;
   }
 
   int getKeyboardNo2()
   {
-    if (keyboardNo2 == null)
-      return 1;
-    else
-    {
+    try {
+    if (keyboardNo2!=null){
       int value = Integer.parseInt(keyboardNo2.toString());
       keyboardNo2 = null;
       return value;
     }
+    } catch (Exception x)
+    {}
+    keyboardNo2 = null;
+    return 1;
   }
-
+  
   void setStatusMessage(SequenceI sequence, int res, int seq)
   {
     StringBuffer text = new StringBuffer("Sequence " + (seq + 1) + " ID: "