JAL-629 implementation of --tempfac options

[jalview.git] / src / jalview / bin / ArgParser.java

diff --git a/src/jalview/bin/ArgParser.java b/src/jalview/bin/ArgParser.java
index be65a9b..bcd4498 100644 (file)
--- a/src/jalview/bin/ArgParser.java
+++ b/src/jalview/bin/ArgParser.java
@@ -58,7 +58,7 @@ public class ArgParser
     ANNOTATION2, DISPLAY, GUI, NEWS, NOQUESTIONNAIRE, SORTBYTREE,
     USAGESTATS, OPEN, OPEN2, PROPS, QUESTIONNAIRE, SETPROP, TREE, VDOC,
     VSESS, OUTPUT, OUTPUTTYPE, SSANNOTATION, NOTEMPFAC, TEMPFAC,
-    TEMPFAC_LABEL, TEMPFAC_DESC, TEMPFAC_SHADING, TITLE;
+    TEMPFAC_LABEL, TEMPFAC_DESC, TEMPFAC_SHADING, TITLE, PAEMATRIX, WRAP;
 
     static
     {
@@ -104,6 +104,8 @@ public class ArgParser
       TEMPFAC_DESC.setOptions(Opt.STRING, Opt.LINKED);
       TEMPFAC_SHADING.setOptions(Opt.STRING, Opt.LINKED);
       TITLE.setOptions(Opt.STRING, Opt.LINKED);
+      PAEMATRIX.setOptions(Opt.STRING, Opt.LINKED);
+      WRAP.setOptions(Opt.BOOLEAN, Opt.LINKED);
     }
 
     private final String[] argNames;