JAL-1919 code improvement to make PDB sequence fetcher file format configurable....

[jalview.git] / src / jalview / bin / Cache.java

diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java
index f9480ab..ebc2c21 100755 (executable)
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -20,6 +20,8 @@
  */
 package jalview.bin;
 
+import jalview.datamodel.DBRefSource;
+import jalview.ws.dbsources.Pdb;
 import jalview.ws.dbsources.das.api.DasSourceRegistryI;
 import jalview.ws.dbsources.das.datamodel.DasSourceRegistry;
 import jalview.ws.sifts.SiftsSettings;
@@ -226,6 +228,8 @@ public class Cache
 
   private final static String DEFAULT_FAIL_SAFE_PID_THRESHOLD = "30";
 
+  private final static String DEFAULT_STRUCTURE_FOMART = DBRefSource.MMCIF;
+
   /**
    * Initialises the Jalview Application Log
    */
@@ -422,6 +426,8 @@ public class Cache
     System.out
             .println("Jalview Version: " + codeVersion + codeInstallation);
 
+    Pdb.setCurrentDefaultFomart(jalview.bin.Cache.getDefault(
+            "DEFAULT_STRUCTURE_FOMART", DEFAULT_STRUCTURE_FOMART));
     // jnlpVersion will be null if we're using InstallAnywhere
     // Dont do this check if running in headless mode
     if (jnlpVersion == null