Formatted source

[jalview.git] / src / jalview / binding / AnnotationElement.java

diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java
index 211810d..3c6eba4 100755 (executable)
--- a/src/jalview/binding/AnnotationElement.java
+++ b/src/jalview/binding/AnnotationElement.java
@@ -4,7 +4,6 @@
  * Schema.\r
  * $Id$\r
  */\r
-\r
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
@@ -23,33 +22,32 @@
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package jalview.binding;\r
 \r
-  //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
 import org.exolab.castor.xml.MarshalException;\r
 import org.exolab.castor.xml.Marshaller;\r
 import org.exolab.castor.xml.Unmarshaller;\r
 import org.exolab.castor.xml.ValidationException;\r
+\r
 import org.xml.sax.ContentHandler;\r
 \r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+\r
+\r
 /**\r
  * Class AnnotationElement.\r
  *\r
  * @version $Revision$ $Date$\r
  */\r
 public class AnnotationElement implements java.io.Serializable {\r
-\r
-\r
-      //--------------------------/\r
-     //- Class/Member Variables -/\r
+    //--------------------------/\r
+    //- Class/Member Variables -/\r
     //--------------------------/\r
 \r
     /**\r
@@ -87,37 +85,28 @@ public class AnnotationElement implements java.io.Serializable {
      */\r
     private boolean _has_value;\r
 \r
-\r
-      //----------------/\r
-     //- Constructors -/\r
     //----------------/\r
-\r
+    //- Constructors -/\r
+    //----------------/\r
     public AnnotationElement() {\r
         super();\r
-    } //-- jalview.binding.AnnotationElement()\r
-\r
-\r
-      //-----------/\r
-     //- Methods -/\r
-    //-----------/\r
+    }\r
+     //-- jalview.binding.AnnotationElement()\r
+ //-----------/\r
 \r
-    /**\r
-     * Method deletePosition\r
-     *\r
-     */\r
-    public void deletePosition()\r
-    {\r
-        this._has_position= false;\r
-    } //-- void deletePosition()\r
+    public void deletePosition() {\r
+        this._has_position = false;\r
+    }\r
+     //-- void deletePosition()\r
 \r
     /**\r
      * Method deleteValue\r
      *\r
      */\r
-    public void deleteValue()\r
-    {\r
-        this._has_value= false;\r
-    } //-- void deleteValue()\r
+    public void deleteValue() {\r
+        this._has_value = false;\r
+    }\r
+     //-- void deleteValue()\r
 \r
     /**\r
      * Returns the value of field 'description'.\r
@@ -125,10 +114,10 @@ public class AnnotationElement implements java.io.Serializable {
      * @return String\r
      * @return the value of field 'description'.\r
      */\r
-    public java.lang.String getDescription()\r
-    {\r
+    public java.lang.String getDescription() {\r
         return this._description;\r
-    } //-- java.lang.String getDescription()\r
+    }\r
+     //-- java.lang.String getDescription()\r
 \r
     /**\r
      * Returns the value of field 'displayCharacter'.\r
@@ -136,10 +125,10 @@ public class AnnotationElement implements java.io.Serializable {
      * @return String\r
      * @return the value of field 'displayCharacter'.\r
      */\r
-    public java.lang.String getDisplayCharacter()\r
-    {\r
+    public java.lang.String getDisplayCharacter() {\r
         return this._displayCharacter;\r
-    } //-- java.lang.String getDisplayCharacter()\r
+    }\r
+     //-- java.lang.String getDisplayCharacter()\r
 \r
     /**\r
      * Returns the value of field 'position'.\r
@@ -147,10 +136,10 @@ public class AnnotationElement implements java.io.Serializable {
      * @return int\r
      * @return the value of field 'position'.\r
      */\r
-    public int getPosition()\r
-    {\r
+    public int getPosition() {\r
         return this._position;\r
-    } //-- int getPosition()\r
+    }\r
+     //-- int getPosition()\r
 \r
     /**\r
      * Returns the value of field 'secondaryStructure'.\r
@@ -158,10 +147,10 @@ public class AnnotationElement implements java.io.Serializable {
      * @return String\r
      * @return the value of field 'secondaryStructure'.\r
      */\r
-    public java.lang.String getSecondaryStructure()\r
-    {\r
+    public java.lang.String getSecondaryStructure() {\r
         return this._secondaryStructure;\r
-    } //-- java.lang.String getSecondaryStructure()\r
+    }\r
+     //-- java.lang.String getSecondaryStructure()\r
 \r
     /**\r
      * Returns the value of field 'value'.\r
@@ -169,10 +158,10 @@ public class AnnotationElement implements java.io.Serializable {
      * @return float\r
      * @return the value of field 'value'.\r
      */\r
-    public float getValue()\r
-    {\r
+    public float getValue() {\r
         return this._value;\r
-    } //-- float getValue()\r
+    }\r
+     //-- float getValue()\r
 \r
     /**\r
      * Method hasPosition\r
@@ -181,10 +170,10 @@ public class AnnotationElement implements java.io.Serializable {
      *\r
      * @return boolean\r
      */\r
-    public boolean hasPosition()\r
-    {\r
+    public boolean hasPosition() {\r
         return this._has_position;\r
-    } //-- boolean hasPosition()\r
+    }\r
+     //-- boolean hasPosition()\r
 \r
     /**\r
      * Method hasValue\r
@@ -193,10 +182,10 @@ public class AnnotationElement implements java.io.Serializable {
      *\r
      * @return boolean\r
      */\r
-    public boolean hasValue()\r
-    {\r
+    public boolean hasValue() {\r
         return this._has_value;\r
-    } //-- boolean hasValue()\r
+    }\r
+     //-- boolean hasValue()\r
 \r
     /**\r
      * Method isValid\r
@@ -205,16 +194,16 @@ public class AnnotationElement implements java.io.Serializable {
      *\r
      * @return boolean\r
      */\r
-    public boolean isValid()\r
-    {\r
+    public boolean isValid() {\r
         try {\r
             validate();\r
-        }\r
-        catch (org.exolab.castor.xml.ValidationException vex) {\r
+        } catch (org.exolab.castor.xml.ValidationException vex) {\r
             return false;\r
         }\r
+\r
         return true;\r
-    } //-- boolean isValid()\r
+    }\r
+     //-- boolean isValid()\r
 \r
     /**\r
      * Method marshal\r
@@ -224,11 +213,11 @@ public class AnnotationElement implements java.io.Serializable {
      * @param out\r
      */\r
     public void marshal(java.io.Writer out)\r
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-\r
+        throws org.exolab.castor.xml.MarshalException, \r
+            org.exolab.castor.xml.ValidationException {\r
         Marshaller.marshal(this, out);\r
-    } //-- void marshal(java.io.Writer)\r
+    }\r
+     //-- void marshal(java.io.Writer)\r
 \r
     /**\r
      * Method marshal\r
@@ -238,42 +227,42 @@ public class AnnotationElement implements java.io.Serializable {
      * @param handler\r
      */\r
     public void marshal(org.xml.sax.ContentHandler handler)\r
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-\r
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
+            org.exolab.castor.xml.ValidationException {\r
         Marshaller.marshal(this, handler);\r
-    } //-- void marshal(org.xml.sax.ContentHandler)\r
+    }\r
+     //-- void marshal(org.xml.sax.ContentHandler)\r
 \r
     /**\r
      * Sets the value of field 'description'.\r
      *\r
      * @param description the value of field 'description'.\r
      */\r
-    public void setDescription(java.lang.String description)\r
-    {\r
+    public void setDescription(java.lang.String description) {\r
         this._description = description;\r
-    } //-- void setDescription(java.lang.String)\r
+    }\r
+     //-- void setDescription(java.lang.String)\r
 \r
     /**\r
      * Sets the value of field 'displayCharacter'.\r
      *\r
      * @param displayCharacter the value of field 'displayCharacter'\r
      */\r
-    public void setDisplayCharacter(java.lang.String displayCharacter)\r
-    {\r
+    public void setDisplayCharacter(java.lang.String displayCharacter) {\r
         this._displayCharacter = displayCharacter;\r
-    } //-- void setDisplayCharacter(java.lang.String)\r
+    }\r
+     //-- void setDisplayCharacter(java.lang.String)\r
 \r
     /**\r
      * Sets the value of field 'position'.\r
      *\r
      * @param position the value of field 'position'.\r
      */\r
-    public void setPosition(int position)\r
-    {\r
+    public void setPosition(int position) {\r
         this._position = position;\r
         this._has_position = true;\r
-    } //-- void setPosition(int)\r
+    }\r
+     //-- void setPosition(int)\r
 \r
     /**\r
      * Sets the value of field 'secondaryStructure'.\r
@@ -281,21 +270,21 @@ public class AnnotationElement implements java.io.Serializable {
      * @param secondaryStructure the value of field\r
      * 'secondaryStructure'.\r
      */\r
-    public void setSecondaryStructure(java.lang.String secondaryStructure)\r
-    {\r
+    public void setSecondaryStructure(java.lang.String secondaryStructure) {\r
         this._secondaryStructure = secondaryStructure;\r
-    } //-- void setSecondaryStructure(java.lang.String)\r
+    }\r
+     //-- void setSecondaryStructure(java.lang.String)\r
 \r
     /**\r
      * Sets the value of field 'value'.\r
      *\r
      * @param value the value of field 'value'.\r
      */\r
-    public void setValue(float value)\r
-    {\r
+    public void setValue(float value) {\r
         this._value = value;\r
         this._has_value = true;\r
-    } //-- void setValue(float)\r
+    }\r
+     //-- void setValue(float)\r
 \r
     /**\r
      * Method unmarshal\r
@@ -306,20 +295,20 @@ public class AnnotationElement implements java.io.Serializable {
      * @return Object\r
      */\r
     public static java.lang.Object unmarshal(java.io.Reader reader)\r
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-        return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, reader);\r
-    } //-- java.lang.Object unmarshal(java.io.Reader)\r
+        throws org.exolab.castor.xml.MarshalException, \r
+            org.exolab.castor.xml.ValidationException {\r
+        return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class,\r
+            reader);\r
+    }\r
+     //-- java.lang.Object unmarshal(java.io.Reader)\r
 \r
     /**\r
      * Method validate\r
      *\r
      */\r
-    public void validate()\r
-        throws org.exolab.castor.xml.ValidationException\r
-    {\r
+    public void validate() throws org.exolab.castor.xml.ValidationException {\r
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
         validator.validate(this);\r
-    } //-- void validate()\r
-\r
+    }\r
+     //-- void validate()\r
 }\r