JAL-1432 updated copyright notices

[jalview.git] / src / jalview / binding / Feature.java

diff --git a/src/jalview/binding/Feature.java b/src/jalview/binding/Feature.java
old mode 100755 (executable)
new mode 100644 (file)
index 509d0e6..1a12502
--- a/src/jalview/binding/Feature.java
+++ b/src/jalview/binding/Feature.java
@@ -1,26 +1,26 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.binding;
 
-// ---------------------------------/
-// - Imported classes and packages -/
-// ---------------------------------/
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
 
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
@@ -86,14 +86,14 @@ public class Feature implements java.io.Serializable
   // -----------/
 
   /**
-   */
+     */
   public void deleteBegin()
   {
     this._has_begin = false;
   }
 
   /**
-   */
+     */
   public void deleteEnd()
   {
     this._has_end = false;
@@ -191,11 +191,10 @@ public class Feature implements java.io.Serializable
    * 
    * @param out
    * @throws org.exolab.castor.xml.MarshalException
-   *                 if object is null or if any SAXException is thrown during
-   *                 marshaling
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    */
   public void marshal(final java.io.Writer out)
           throws org.exolab.castor.xml.MarshalException,
@@ -209,13 +208,12 @@ public class Feature implements java.io.Serializable
    * 
    * @param handler
    * @throws java.io.IOException
-   *                 if an IOException occurs during marshaling
+   *           if an IOException occurs during marshaling
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    * @throws org.exolab.castor.xml.MarshalException
-   *                 if object is null or if any SAXException is thrown during
-   *                 marshaling
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
    */
   public void marshal(final org.xml.sax.ContentHandler handler)
           throws java.io.IOException,
@@ -229,7 +227,7 @@ public class Feature implements java.io.Serializable
    * Sets the value of field 'begin'.
    * 
    * @param begin
-   *                the value of field 'begin'.
+   *          the value of field 'begin'.
    */
   public void setBegin(final int begin)
   {
@@ -241,7 +239,7 @@ public class Feature implements java.io.Serializable
    * Sets the value of field 'description'.
    * 
    * @param description
-   *                the value of field 'description'.
+   *          the value of field 'description'.
    */
   public void setDescription(final java.lang.String description)
   {
@@ -252,7 +250,7 @@ public class Feature implements java.io.Serializable
    * Sets the value of field 'end'.
    * 
    * @param end
-   *                the value of field 'end'.
+   *          the value of field 'end'.
    */
   public void setEnd(final int end)
   {
@@ -264,7 +262,7 @@ public class Feature implements java.io.Serializable
    * Sets the value of field 'status'.
    * 
    * @param status
-   *                the value of field 'status'.
+   *          the value of field 'status'.
    */
   public void setStatus(final java.lang.String status)
   {
@@ -275,7 +273,7 @@ public class Feature implements java.io.Serializable
    * Sets the value of field 'type'.
    * 
    * @param type
-   *                the value of field 'type'.
+   *          the value of field 'type'.
    */
   public void setType(final java.lang.String type)
   {
@@ -287,11 +285,10 @@ public class Feature implements java.io.Serializable
    * 
    * @param reader
    * @throws org.exolab.castor.xml.MarshalException
-   *                 if object is null or if any SAXException is thrown during
-   *                 marshaling
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    * @return the unmarshaled jalview.binding.Feature
    */
   public static jalview.binding.Feature unmarshal(
@@ -307,8 +304,7 @@ public class Feature implements java.io.Serializable
    * 
    * 
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    */
   public void validate() throws org.exolab.castor.xml.ValidationException
   {