Merge branch 'bug/JAL-2541cutWithFeatures' into features/JAL-2446NCList

[jalview.git] / src / jalview / commands / EditCommand.java

diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java
index 98ac2d5..388c533 100644 (file)
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -555,6 +555,7 @@ public class EditCommand implements CommandI
               command.oldds = new SequenceI[command.seqs.length];
             }
             command.oldds[i] = oldds;
+            // FIXME JAL-2541 JAL-2526 get correct positions if on a gap
             adjustFeatures(
                     command,
                     i,
@@ -1101,8 +1102,8 @@ public class EditCommand implements CommandI
     }
   }
 
-  final static void adjustFeatures(Edit command, int index, int i, int j,
-          boolean insert)
+  final static void adjustFeatures(Edit command, int index, final int i,
+          final int j, boolean insert)
   {
     SequenceI seq = command.seqs[index];
     SequenceI sequence = seq.getDatasetSequence();