JAL-653 JAL-1968 FeaturesFile now handles Jalview or GFF2 or GFF3

[jalview.git] / src / jalview / controller / AlignViewController.java

diff --git a/src/jalview/controller/AlignViewController.java b/src/jalview/controller/AlignViewController.java
index a39dc80..e4f11e0 100644 (file)
--- a/src/jalview/controller/AlignViewController.java
+++ b/src/jalview/controller/AlignViewController.java
@@ -394,7 +394,7 @@ public class AlignViewController implements AlignViewControllerI
     boolean featuresFile = false;
     try
     {
-      featuresFile = new FeaturesFile(file, protocol).parse(viewport
+      featuresFile = new FeaturesFile(false, file, protocol).parse(viewport
               .getAlignment().getDataset(), alignPanel.getFeatureRenderer()
               .getFeatureColours(), false, relaxedIdMatching);
     } catch (Exception ex)