JAL-3691 automatic insertion of Locale.ROOT to toUpperCase() and toLowerCase() and...

[jalview.git] / src / jalview / datamodel / DBRefSource.java

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index 2f94884..2d2ae4f 100755 (executable)
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -36,29 +36,31 @@ package jalview.datamodel;
  * @author JimP
  * 
  */
+import java.util.Locale;
+
 public class DBRefSource
 {
   
   
   
   public static final String UNIPROT = "UNIPROT";
-  public static final String UP_NAME = "UNIPROT_NAME".toUpperCase();
+  public static final String UP_NAME = "UNIPROT_NAME".toUpperCase(Locale.ROOT);
   /**
    * Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
    */
-  public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase();
+  public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase(Locale.ROOT);
 
   public static final String ENSEMBL        = "ENSEMBL";
   public static final String ENSEMBLGENOMES = "ENSEMBLGENOMES";
   
   public static final String EMBL           = "EMBL";
   public static final String EMBLCDS        = "EMBLCDS";
-  public static final String EMBLCDSProduct = "EMBLCDSProtein".toUpperCase();
+  public static final String EMBLCDSProduct = "EMBLCDSProtein".toUpperCase(Locale.ROOT);
 
   public static final String PDB    = "PDB";
   public static final String PFAM   = "PFAM";
   public static final String RFAM   = "RFAM";
-  public static final String GENEDB = "GeneDB".toUpperCase();
+  public static final String GENEDB = "GeneDB".toUpperCase(Locale.ROOT);
 
   public static final String PDB_CANONICAL_NAME = PDB;
 
@@ -146,7 +148,7 @@ public class DBRefSource
     // see if there is a primary reference that derived this reference.
     for (int i = allSources.length; --i >= 0;)
     {
-      if (ucversion.startsWith(allSources[i])) // BH 2019.01.25 .toUpperCase() unnecessary here for allSources
+      if (ucversion.startsWith(allSources[i])) // BH 2019.01.25 .toUpperCase(Locale.ROOT) unnecessary here for allSources
       {
         // by convention, many secondary references inherit the primary
         // reference's