update author list in license for (JAL-826)

[jalview.git] / src / jalview / datamodel / DBRefSource.java

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index 575ba68..fbd11ad 100755 (executable)
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -1,20 +1,19 @@
 /*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)\r
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle\r
  * \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
+ * This file is part of Jalview.\r
  * \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
- * GNU General Public License for more details.\r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
  * \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE.  See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.\r
  */\r
 package jalview.datamodel;\r
 \r
@@ -62,6 +61,11 @@ public class DBRefSource
    * PFAM ID\r
    */\r
   public static String PFAM = "PFAM";\r
+  \r
+  /**\r
+   * RFAM ID\r
+   */\r
+  public static String RFAM = "RFAM";\r
 \r
   /**\r
    * GeneDB ID\r
@@ -87,7 +91,7 @@ public class DBRefSource
   { PDB };\r
 \r
   public static final String[] DOMAINDBS =\r
-  { PFAM };\r
+  { PFAM, RFAM };\r
 \r
   /**\r
    * set of unique DBRefSource property constants. These could be used to\r
@@ -116,7 +120,7 @@ public class DBRefSource
   public static final Object DNACODINGSEQDB = "XONCODING";\r
 \r
   /**\r
-   * DB returns several sequences associated with a protein domain\r
+   * DB returns several sequences associated with a protein/nucleotide domain\r
    */\r
   public static final Object DOMAINDB = "DOMAIN";\r
 \r
@@ -126,4 +130,9 @@ public class DBRefSource
    * time.\r
    */\r
   public static final Object MULTIACC = "MULTIACC";\r
+\r
+  /**\r
+   * DB query returns an alignment for each accession provided.\r
+   */\r
+  public static final Object ALIGNMENTDB = "ALIGNMENTS";\r
 }\r