+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)\r
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
+ * \r
+ * This file is part of Jalview.\r
+ * \r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
+ * \r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
+ */\r
package jalview.datamodel;\r
\r
/**\r
* A set of feature property constants used by jalview\r
+ * \r
* @author JimP\r
- *\r
+ * \r
*/\r
public class FeatureProperties\r
{\r
\r
public static final String EXONPOS = "exon number";\r
+\r
public static final String EXONPRODUCT = "product";\r
+\r
/**\r
- * lookup feature type for a particular database to see if its a coding region feature\r
+ * lookup feature type for a particular database to see if its a coding region\r
+ * feature\r
+ * \r
* @param dbrefsource\r
* @param string\r
* @return\r
*/\r
public static boolean isCodingFeature(String dbrefsource, String type)\r
{\r
- return ((dbrefsource==null || dbrefsource.equalsIgnoreCase(DBRefSource.EMBL))\r
- && type.equalsIgnoreCase("CDS"));\r
+ return ((dbrefsource == null\r
+ || dbrefsource.equalsIgnoreCase(DBRefSource.EMBL) || dbrefsource\r
+ .equalsIgnoreCase(DBRefSource.EMBLCDS)) && type\r
+ .equalsIgnoreCase("CDS"));\r
}\r
}\r