JAL-2597 Fix and unit test

[jalview.git] / src / jalview / datamodel / HiddenColumns.java

diff --git a/src/jalview/datamodel/HiddenColumns.java b/src/jalview/datamodel/HiddenColumns.java
index d34b316..169b0a4 100644 (file)
--- a/src/jalview/datamodel/HiddenColumns.java
+++ b/src/jalview/datamodel/HiddenColumns.java
@@ -1407,8 +1407,7 @@ public class HiddenColumns
     // recover mapping between sequence's non-gap positions and positions
     // mapping to view.
     pruneDeletions(ShiftList.parseMap(origseq.gapMap()));
-    int[] viscontigs = al.getHiddenColumns().getVisibleContigs(0,
-            profileseq.getLength());
+    int[] viscontigs = getVisibleContigs(0, profileseq.getLength());
     int spos = 0;
     int offset = 0;