test HMMER colour scheme

[jalview.git] / src / jalview / datamodel / HiddenMarkovModel.java

diff --git a/src/jalview/datamodel/HiddenMarkovModel.java b/src/jalview/datamodel/HiddenMarkovModel.java
index e214373..5331f3d 100644 (file)
--- a/src/jalview/datamodel/HiddenMarkovModel.java
+++ b/src/jalview/datamodel/HiddenMarkovModel.java
@@ -290,7 +290,7 @@ public class HiddenMarkovModel
     int symbolIndex;
     int nodeIndex;
     Double probability;
-    if (symbol == '-')
+    if (!symbolIndexLookup.containsKey(symbol))
     {
       return 0d;
     }
@@ -322,7 +322,7 @@ public class HiddenMarkovModel
     int symbolIndex;
     int nodeIndex;
     Double probability;
-    if (symbol == '-')
+    if (!symbolIndexLookup.containsKey(symbol))
     {
       return 0d;
     }