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JAL-3725 restrict mapped virtual feature location to mapped region
[jalview.git]
/
src
/
jalview
/
datamodel
/
MappedFeatures.java
diff --git
a/src/jalview/datamodel/MappedFeatures.java
b/src/jalview/datamodel/MappedFeatures.java
index
d652a97
..
57c8c37
100644
(file)
--- a/
src/jalview/datamodel/MappedFeatures.java
+++ b/
src/jalview/datamodel/MappedFeatures.java
@@
-294,8
+294,8
@@
public class MappedFeatures
public int[] getMappedPositions(int begin, int end)
{
MapList map = mapping.getMap();
public int[] getMappedPositions(int begin, int end)
{
MapList map = mapping.getMap();
- return mapping.to == featureSequence ? map.locateInFrom(begin, end)
- : map.locateInTo(begin, end);
+ return mapping.to == featureSequence ? map.getOverlapsInFrom(begin, end)
+ : map.getOverlapsInTo(begin, end);
}
/**
}
/**