Merge remote-tracking branch 'origin/develop' into

[jalview.git] / src / jalview / datamodel / Sequence.java

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 96e469a..963a7cf 100755 (executable)
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -725,6 +725,7 @@ public class Sequence implements SequenceI
     {
       return;
     }
+    // TODO use StringUtils.deleteChars
 
     char[] tmp;
 
@@ -1024,7 +1025,7 @@ public class Sequence implements SequenceI
           AlignmentAnnotation _aa = new AlignmentAnnotation(aa);
           _aa.sequenceRef = datasetSequence;
           _aa.adjustForAlignment(); // uses annotation's own record of
-                                   // sequence-column mapping
+                                    // sequence-column mapping
           datasetSequence.addAlignmentAnnotation(_aa);
         }
       }
@@ -1245,8 +1246,10 @@ public class Sequence implements SequenceI
           String label)
   {
     List<AlignmentAnnotation> result = new ArrayList<AlignmentAnnotation>();
-    if (this.annotation != null) {
-      for (AlignmentAnnotation ann : annotation) {
+    if (this.annotation != null)
+    {
+      for (AlignmentAnnotation ann : annotation)
+      {
         if (ann.calcId != null && ann.calcId.equals(calcId)
                 && ann.label != null && ann.label.equals(label))
         {