Formatted source

[jalview.git] / src / jalview / datamodel / SequenceFeature.java

diff --git a/src/jalview/datamodel/SequenceFeature.java b/src/jalview/datamodel/SequenceFeature.java
index a2856fa..f7d8d89 100755 (executable)
--- a/src/jalview/datamodel/SequenceFeature.java
+++ b/src/jalview/datamodel/SequenceFeature.java
@@ -16,85 +16,86 @@
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package jalview.datamodel;\r
 \r
 import java.awt.*;\r
 \r
+\r
 public class SequenceFeature {\r
-  int begin;\r
-  int end;\r
-  String type;\r
-  String description;\r
-  String status;\r
+    int begin;\r
+    int end;\r
+    String type;\r
+    String description;\r
+    String status;\r
 \r
-  public SequenceFeature()\r
-  {\r
-  }\r
+    public SequenceFeature() {\r
+    }\r
 \r
-  public SequenceFeature(String type, int start, int end, String description, String status)\r
-  {\r
-    this.type = type;\r
-    this.begin = start;\r
-    this.end = end;\r
-    this.description = description;\r
-    this.status = status;\r
-  }\r
+    public SequenceFeature(String type, int start, int end, String description,\r
+        String status) {\r
+        this.type = type;\r
+        this.begin = start;\r
+        this.end = end;\r
+        this.description = description;\r
+        this.status = status;\r
+    }\r
 \r
-  public int getStart() {\r
-    return begin;\r
-  }\r
-  public int getEnd() {\r
-    return end;\r
-  }\r
-  public String getType() {\r
-    return type;\r
-  }\r
-  public String getDescription() {\r
-    return description;\r
-  }\r
-  public String getStatus()\r
-  {return status;}\r
+    public int getStart() {\r
+        return begin;\r
+    }\r
 \r
+    public int getEnd() {\r
+        return end;\r
+    }\r
 \r
-/*\r
-      <xs:enumeration value="active site" />\r
-<xs:enumeration value="binding site" />\r
-<xs:enumeration value="calcium-binding region" />\r
-<xs:enumeration value="chain" />\r
-<xs:enumeration value="cross-link" />\r
-<xs:enumeration value="disulfide bond" />\r
-<xs:enumeration value="DNA-binding region" />\r
-<xs:enumeration value="domain" />\r
-<xs:enumeration value="glycosylation site" />\r
-<xs:enumeration value="helix" />\r
-<xs:enumeration value="initiator methionine" />\r
-<xs:enumeration value="lipid moiety-binding region" />\r
-<xs:enumeration value="metal ion-binding site" />\r
-<xs:enumeration value="modified residue" />\r
-<xs:enumeration value="mutagenesis site" />\r
-<xs:enumeration value="non-consecutive residues" />\r
-<xs:enumeration value="non-terminal residue" />\r
-<xs:enumeration value="nucleotide phosphate-binding region" />\r
-<xs:enumeration value="peptide" />\r
-<xs:enumeration value="propeptide" />\r
-<xs:enumeration value="repeat" />\r
-<xs:enumeration value="selenocysteine" />\r
-<xs:enumeration value="sequence conflict" />\r
-<xs:enumeration value="sequence variant" />\r
-<xs:enumeration value="signal peptide" />\r
-<xs:enumeration value="similar" />\r
-<xs:enumeration value="site" />\r
-<xs:enumeration value="splice variant" />\r
-<xs:enumeration value="strand" />\r
-<xs:enumeration value="thioether bond" />\r
-<xs:enumeration value="thiolester bond" />\r
-<xs:enumeration value="transit peptide" />\r
-<xs:enumeration value="transmembrane region" />\r
-<xs:enumeration value="turn" />\r
-<xs:enumeration value="unsure residue" />\r
-<xs:enumeration value="zinc finger region" />\r
-*/\r
+    public String getType() {\r
+        return type;\r
+    }\r
 \r
-}\r
+    public String getDescription() {\r
+        return description;\r
+    }\r
+\r
+    public String getStatus() {\r
+        return status;\r
+    }\r
 \r
+    /*\r
+          <xs:enumeration value="active site" />\r
+    <xs:enumeration value="binding site" />\r
+    <xs:enumeration value="calcium-binding region" />\r
+    <xs:enumeration value="chain" />\r
+    <xs:enumeration value="cross-link" />\r
+    <xs:enumeration value="disulfide bond" />\r
+    <xs:enumeration value="DNA-binding region" />\r
+    <xs:enumeration value="domain" />\r
+    <xs:enumeration value="glycosylation site" />\r
+    <xs:enumeration value="helix" />\r
+    <xs:enumeration value="initiator methionine" />\r
+    <xs:enumeration value="lipid moiety-binding region" />\r
+    <xs:enumeration value="metal ion-binding site" />\r
+    <xs:enumeration value="modified residue" />\r
+    <xs:enumeration value="mutagenesis site" />\r
+    <xs:enumeration value="non-consecutive residues" />\r
+    <xs:enumeration value="non-terminal residue" />\r
+    <xs:enumeration value="nucleotide phosphate-binding region" />\r
+    <xs:enumeration value="peptide" />\r
+    <xs:enumeration value="propeptide" />\r
+    <xs:enumeration value="repeat" />\r
+    <xs:enumeration value="selenocysteine" />\r
+    <xs:enumeration value="sequence conflict" />\r
+    <xs:enumeration value="sequence variant" />\r
+    <xs:enumeration value="signal peptide" />\r
+    <xs:enumeration value="similar" />\r
+    <xs:enumeration value="site" />\r
+    <xs:enumeration value="splice variant" />\r
+    <xs:enumeration value="strand" />\r
+    <xs:enumeration value="thioether bond" />\r
+    <xs:enumeration value="thiolester bond" />\r
+    <xs:enumeration value="transit peptide" />\r
+    <xs:enumeration value="transmembrane region" />\r
+    <xs:enumeration value="turn" />\r
+    <xs:enumeration value="unsure residue" />\r
+    <xs:enumeration value="zinc finger region" />\r
+    */\r
+}\r