JAL-3253-applet JAL-3383 Overview speed up -- see Issue comments.

[jalview.git] / src / jalview / datamodel / SequenceI.java

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index e521029..013897d 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -584,11 +584,37 @@ public interface SequenceI extends ASequenceI
    */
   public int firstResidueOutsideIterator(Iterator<int[]> it);
 
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * get a 4-byte color, with caching
+   * 
+   */
   public int getColor(int i);
 
-  public int setColor(int i, int rgb);
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * set a 4-byte color, with caching
+   * 
+   */
+  public int setColor(int i, int argb);
 
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * allows resetting the color cache
+   * 
+   */
   public void resetColors();
 
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * allows passing the result ArrayList as a parameter to avoid unnecessary construction
+   * 
+   */
+  void findFeatures(int column, String type, List<SequenceFeature> result);
+
 }