*/
package jalview.datamodel;
+import jalview.jsdev.api.VarnaRNA;
+
import java.util.List;
import java.util.Vector;
-import fr.orsay.lri.varna.models.rna.RNA;
+//import fr.orsay.lri.varna.models.rna.RNA;
/**
- * DOCUMENT ME!
+ * Methods for manipulating a sequence, its metadata and related annotation in
+ * an alignment or dataset.
*
* @author $author$
* @version $Revision$
*/
-public interface SequenceI
+public interface SequenceI extends ASequenceI
{
/**
* Set the display name for the sequence
* @return The RNA of the sequence in the alignment
*/
- public RNA getRNA();
+ public VarnaRNA getRNA();
/**
* @param rna
* The RNA.
*/
- public void setRNA(RNA rna);
+ public void setRNA(VarnaRNA rna);
/**
*