JAL-1712 fixes/tests for Castor binding and 'show flanking regions'

[jalview.git] / src / jalview / datamodel / SequenceI.java

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 64a57ba..9751657 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -134,12 +134,13 @@ public interface SequenceI
   public char[] getSequence(int start, int end);
 
   /**
-   * create a new sequence object from start to end of this sequence
+   * create a new sequence object with a subsequence of this one but sharing the
+   * same dataset sequence
    * 
    * @param start
-   *          int index for start position
+   *          int index for start position (base 0, inclusive)
    * @param end
-   *          int index for end position
+   *          int index for end position (base 0, exclusive)
    * 
    * @return SequenceI
    * @note implementations may use getSequence to get the sequence data