JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / datamodel / UniprotEntry.java

diff --git a/src/jalview/datamodel/UniprotEntry.java b/src/jalview/datamodel/UniprotEntry.java
index bd2c37c..e1a09ea 100755 (executable)
--- a/src/jalview/datamodel/UniprotEntry.java
+++ b/src/jalview/datamodel/UniprotEntry.java
@@ -1,56 +1,63 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.datamodel;
 
-import java.util.*;
+import java.util.Vector;
 
+/**
+ * Data model for an entry returned from a Uniprot query
+ * 
+ * @see uniprot_mapping.xml
+ */
 public class UniprotEntry
 {
 
   UniprotSequence sequence;
 
-  Vector name;
+  Vector<String> name;
 
-  Vector accession;
+  Vector<String> accession;
 
-  Vector feature;
+  Vector<SequenceFeature> feature;
 
-  Vector dbrefs;
+  Vector<PDBEntry> dbrefs;
 
   UniprotProteinName protName;
 
-  public void setAccession(Vector items)
+  public void setAccession(Vector<String> items)
   {
     accession = items;
   }
 
-  public void setFeature(Vector items)
+  public void setFeature(Vector<SequenceFeature> items)
   {
     feature = items;
   }
 
-  public Vector getFeature()
+  public Vector<SequenceFeature> getFeature()
   {
     return feature;
   }
 
-  public Vector getAccession()
+  public Vector<String> getAccession()
   {
     return accession;
   }
@@ -65,12 +72,12 @@ public class UniprotEntry
     return protName;
   }
 
-  public void setName(Vector na)
+  public void setName(Vector<String> na)
   {
     name = na;
   }
 
-  public Vector getName()
+  public Vector<String> getName()
   {
     return name;
   }
@@ -85,12 +92,12 @@ public class UniprotEntry
     sequence = seq;
   }
 
-  public Vector getDbReference()
+  public Vector<PDBEntry> getDbReference()
   {
     return dbrefs;
   }
 
-  public void setDbReference(Vector dbref)
+  public void setDbReference(Vector<PDBEntry> dbref)
   {
     this.dbrefs = dbref;
   }