JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / datamodel / UniprotSequence.java

diff --git a/src/jalview/datamodel/UniprotSequence.java b/src/jalview/datamodel/UniprotSequence.java
index c33914c..c9b84fa 100755 (executable)
--- a/src/jalview/datamodel/UniprotSequence.java
+++ b/src/jalview/datamodel/UniprotSequence.java
@@ -1,42 +1,58 @@
-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- *\r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- *\r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
- * GNU General Public License for more details.\r
- *\r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
- */\r
-package jalview.datamodel;\r
-\r
-public class UniprotSequence\r
-{\r
-    /**\r
-   * internal content storage\r
-   */\r
-  private java.lang.String _content = "";\r
-\r
-  public void setContent(String seq)\r
-  {\r
-    StringBuffer sb = new StringBuffer();\r
-    for(int i=0; i<seq.length(); i++)\r
-      if(seq.charAt(i)!=' ')\r
-      {\r
-        sb.append(seq.charAt(i));\r
-      }\r
-    _content = sb.toString();\r
-  }\r
-\r
-  public String getContent()\r
-  { return _content; }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.datamodel;
+
+/**
+ * Data model for the sequence returned by a Uniprot query
+ * 
+ * @see uniprot_mapping.xml
+ */
+public class UniprotSequence
+{
+  private String _content = "";
+
+  /**
+   * Sets the content string, omitting any space characters
+   * 
+   * @param seq
+   */
+  public void setContent(String seq)
+  {
+    if (seq != null)
+    {
+      StringBuilder sb = new StringBuilder(seq.length());
+      for (int i = 0; i < seq.length(); i++)
+      {
+        if (seq.charAt(i) != ' ')
+        {
+          sb.append(seq.charAt(i));
+        }
+      }
+      _content = sb.toString();
+    }
+  }
+
+  public String getContent()
+  {
+    return _content;
+  }
+
+}