update author list in license for (JAL-826)

[jalview.git] / src / jalview / datamodel / xdb / embl / Qualifier.java

diff --git a/src/jalview/datamodel/xdb/embl/Qualifier.java b/src/jalview/datamodel/xdb/embl/Qualifier.java
index 1c2d66e..c0b0cf7 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/src/jalview/datamodel/xdb/embl/Qualifier.java
@@ -1,31 +1,108 @@
-package jalview.datamodel.xdb.embl;\r
-\r
-public class Qualifier {\r
-    String name;\r
-    String value;\r
-    /**\r
-     * @return the name\r
-     */\r
-    public String getName() {\r
-        return name;\r
-    }\r
-    /**\r
-     * @param name the name to set\r
-     */\r
-    public void setName(String name) {\r
-        this.name = name;\r
-    }\r
-    /**\r
-     * @return the value\r
-     */\r
-    public String getValue() {\r
-        return value;\r
-    }\r
-    /**\r
-     * @param value the value to set\r
-     */\r
-    public void setValue(String value) {\r
-        this.value = value;\r
-    }\r
-    \r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ */
+package jalview.datamodel.xdb.embl;
+
+public class Qualifier
+{
+  String name;
+
+  String[] values;
+
+  String[] evidence;
+
+  /**
+   * @return the name
+   */
+  public String getName()
+  {
+    return name;
+  }
+
+  /**
+   * @param name
+   *          the name to set
+   */
+  public void setName(String name)
+  {
+    this.name = name;
+  }
+
+  /**
+   * @return the values
+   */
+  public String[] getValues()
+  {
+    return values;
+  }
+
+  /**
+   * @param values
+   *          the values to set
+   */
+  public void setValues(String[] values)
+  {
+    this.values = values;
+  }
+
+  public void addEvidence(String qevidence)
+  {
+    if (evidence == null)
+    {
+      evidence = new String[1];
+    }
+    else
+    {
+      String[] temp = new String[evidence.length + 1];
+      System.arraycopy(evidence, 0, temp, 0, evidence.length);
+      evidence = temp;
+    }
+    evidence[evidence.length - 1] = qevidence;
+  }
+
+  public void addValues(String value)
+  {
+    if (values == null)
+    {
+      values = new String[1];
+    }
+    else
+    {
+      String[] temp = new String[values.length + 1];
+      System.arraycopy(values, 0, temp, 0, values.length);
+      values = temp;
+    }
+    values[values.length - 1] = value;
+  }
+
+  /**
+   * @return the evidence
+   */
+  public String[] getEvidence()
+  {
+    return evidence;
+  }
+
+  /**
+   * @param evidence
+   *          the evidence to set
+   */
+  public void setEvidence(String[] evidence)
+  {
+    this.evidence = evidence;
+  }
+}